KEGG   Canis lupus familiaris (dog): 477810
Entry
477810            CDS       T01007                                 
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X2
  KO
K14792  rRNA biogenesis protein RRP5
Organism
cfa  Canis lupus familiaris (dog)
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cfa03009]
    477810 (PDCD11)
Ribosome biogenesis [BR:cfa03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    477810 (PDCD11)
SSDB
Motif
Pfam: S1 Spt6_S1 TPR_14 Suf TPR_19 TPR_15 NRDE-2 TPR_6
Other DBs
NCBI-GeneID: 477810
NCBI-ProteinID: XP_038316629
Ensembl: ENSCAFG00000010411
VGNC: 44335
Position
28:15939911..15984168
AA seq 1829 aa
MEESFPRGGTRKTHKLEKAFQQSVEQDNLFDISIEEESTKRKKSQKGPAKTKKLKIEKRE
SSKSVREKFEVLSVESLREGMRILGCVKEVHELELVISLPNGLQGFVQATEICDAYTEQL
NEQVAQEEPLKDLVCLSELFSPGMLVRCVVSSVGITESGKKSVKLSLNPKNVNEVLSAEA
LKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCII
EEVKGNGGVVGLSIGPSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLTF
FSGLVDFMHLDPKKAGTYFSNQAVRACVLCVHPRTRAVRLSLRPIFLQPGRSLTRLSCQH
LGAVLDDVPVQSFFSKAGATFRLKDGALAYARLSHLSDSKNIFNAEAYKPGNIHKCRIID
YSQMDEMVLLSLRPSIIESQYFRYHDIKPGALVKGTVLTIEPYGMLVKVGEQIRGLIPPM
HLADILIKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITCYADAKPGL
QTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYTGQVVKVVVLNCEPSK
ERMLLSFKLLGDPKKEHTGHSQKKRRAISVGQLVDVKVLEKTKDGLEVSVLPHNIPAFLP
TPHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKNFAE
IHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTN
VDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTP
GMVLDLEVQEVLEDGSVVFSEGPVSGLVLRASKYHRAGQEVEPGQKKKVVILNVDMLKLE
VHVSLCHDLVNRKPKKLKKGSEHQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRF
DSEKLQVGQGVSLTLKTTEPGMTGFLLAVEGPAAKRTVRQTRKDSETVDEDEEADPALVV
GAVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPVGTSPTAKLKVG
RTVTARVIGGRDMKTFKFLPISHPRFIRTIPELSVRPSELEKDGCTALNTHSSSHLEKIK
QYQAGQTLICFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALK
ATVVGPDSSKAFLCLSLIGPHKLEKGEVAMGRVVKVTPKEGLTVSFPFGKIGKVSVFHVS
DSYSETPLEDFVPQKIVRCYVLSATGHVLTLSLRSSRTNPETKSKITDPEINSIQDIQEG
QLLRGYVKSVQPHGVLFGLKCQKNLVELSFLPNDTGKPDVFPASLGLPLLKQEERTEEAE
ENKHKEEEKEEKNQKRKGKRNQEGQEGVQLPGEEKKEPQKLQAKKQGKRRRRESAGEQER
VNKKQKKAAPSEEDDSGVEVYYREGEEEVEEMSVLPKEKPRRPAEVPRLQLSSGFIWDVG
LDSLTPALPPRGESSDSEEDNKPQQSTQKKSKKERMLEKQKAEKELSRIEEALMDPGRQP
ESADDFDRLLLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWV
ALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYNKSEKFQEAGELYNRMLKRFR
QEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDAERAKA
IFENTLSTYPKRTDVWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYE
KQHGTEKDVQAVKAKALEYVEAKSSVLED
NT seq 5490 nt   +upstreamnt  +downstreamnt
atggaagaaagcttcccccgagggggtacaagaaagacccacaaattagagaaagctttc
cagcagtcagttgaacaagacaacttatttgatatttctattgaagaggaatccaccaaa
aggaaaaagagccagaaagggccagcaaaaacaaaaaagttgaaaatcgagaagagagaa
agcagcaagtctgtaagagagaagtttgaagtccttagtgttgagtccctgcgtgagggg
atgcggattttgggttgtgtgaaggaggtacatgaactagaactggttatcagtctgccc
aatggcctccagggctttgtgcaagcaacagaaatctgtgatgcctataccgagcagctg
aatgagcaggtagctcaagaagaacctctgaaggacctggtctgcttgtctgaactcttc
tcacctgggatgctagtgagatgtgtggtgagcagtgtgggcatcacagagagcggcaaa
aagagtgtcaagctatctctgaaccccaaaaatgtcaacgaagtgctaagtgctgaggcc
ctgaagcctggcatgctgctcacaggcactgtgtccagcttggaagaccatggctaccta
gtggacattggtgttagtggggccagagcctttctgccattacagaaagcccaggagtat
atccgacagaagaacaaaggtgcgaaactgaaggtgggtcagtacctgaactgcatcatt
gaagaagtgaaaggcaatggaggagttgttggtctgtctattggtccttctgaagtttct
gctgccattgctactgaggagcaaaactggacccttaataacttgctaccaggactggtc
gtcaaagctcaggtacagaaggtaactccagttggccttacactaaacttcctcacattc
ttcagtggcctggtcgacttcatgcacctagatcccaagaaagctggaacatatttctca
aatcaagcagtaagagcctgtgttctctgtgtccatcctcgaaccagggccgtgcggctg
agcctgcgccccatcttcctgcagcctgggcgctcactcacccggctctcctgccagcac
ctgggagctgtgctggatgatgttcctgtgcagagctttttcagcaaggctggggccacc
ttcaggctgaaggatggggcactggcctatgctcggctcagccatctctccgattctaag
aacatcttcaatgctgaggcctacaaaccagggaacattcacaagtgtagaatcattgat
tacagccaaatggatgagatggtgttgctctctctgaggccgtctattattgaatctcag
tactttagatatcatgacatcaaacctggggcattagtaaagggcacagtgctgaccata
gagccatatgggatgctggtgaaggtgggtgagcaaatcagaggcttgatacctcccatg
cacctggctgacatcctgataaagaatccagagaagaagtaccacattggggatgaggtc
aagtgccgggttttgctttgtgatcctgaagccaaaaagctaatgatgaccctgaagaaa
accctgattgagtctaaactgcctgccattacctgctatgctgatgccaagcctggtctg
cagacgcacggcttcatcctccgggtcaaggactatgggtgcattgtgaagttctacaac
gatgtgcagggactggtgcccaagcatgagctcagtgccgagtatgtccctgacccagag
agggtcttttacactggccaggtggtgaaggttgtagtgctgaactgtgagccgtccaaa
gagaggatgcttttgtccttcaagctgttgggtgatccaaagaaagagcatacgggacac
agtcagaagaaaagaagagccattagtgttggacagttggtggatgtgaaggttttagag
aagaccaaagatgggctggaagtgtctgtcctgccccataacatccctgctttcctcccc
acacctcatctctcggaccacgtcgccaatggccctctgttgtatcactggctccaggct
ggcgacacccttcacagagtactttgtctgagccagagtgagggacgtgttctcctttgt
aggaagccagctttggtctccacagtggagggtggccaggatcctaagaacttcgcagaa
atccatcctgggatgctgctcatcggttttgtgaagagcatcaaggactatggtgtgttt
gtccagttcccgtcaggtctcagtggactggcccctaaagctatcatgagtgacaagttt
gtgacttctacaagtgaccactttgttgaggggcagacagtggttgcaaaggtgaccaac
gtggatgaggagaagcagcgcatgctgctctcgctgcgtctgtcagactgcggtctgggg
gacctggctaccaccagcctcctcctcctcagccagtgcctggaagagcggcagggtgtg
cgcagcctcatgagcaaccgagactctgtgttgatccagacgctggctgagatgacccca
gggatggtccttgacctagaggtacaggaggtgttggaggatggctctgtggtgttcagt
gagggcccggtgtctggcctggtcctgagggccagcaaatatcatcgagcagggcaagag
gtggagcctgggcagaaaaagaaagttgtcatcctaaatgttgatatgttgaagttggaa
gtacatgtttccctttgtcacgatttggtgaatagaaaacctaaaaagctgaagaaaggc
agtgagcaccaagcaattgtgcagcacttggaggagtcctttgctgtcgcctccttggta
gagactggccacctggcagctttctccctgacctctcacctcaatgacaccttccgcttt
gactcagagaagttgcaagtgggacagggtgtctccctaaccctcaagaccacagaacca
ggaatgactggttttcttttggccgttgaggggccagctgctaagaggactgtgagacag
acccggaaggactctgagacagttgatgaagatgaggaagcagatccagctctggttgtg
ggggctgtaaagaagcacaccctatccattggggacatggtcacaggcactgtcaagtct
attaagcccacccacgtggttgtgaccctggaagatggcatcattggctgtattcatgcc
tcccacattctagatgatgttccagtgggcacatctcctactgccaagttgaaagttggg
aggacagtcactgcccgagtgattggtgggagagatatgaagacgttcaagtttcttcca
ataagtcatcccagatttattcgaaccattccggagctgagtgtccggccaagtgagctg
gagaaagatggctgcactgctctcaacactcactcttctagccacttggagaagattaaa
cagtaccaggctgggcagactttgatttgcttcttgaagaagtacaatgtggttaagaaa
tggcttgaggtggagattgctccagatatccggggcaggattcccttgttgcttacttct
ctcagcttcaaggttctgaaacatccagataagaagttccggattggccaggccctgaag
gctactgtggttggcccagattcgtccaaagccttcttatgtctctcacttataggtccg
cacaagcttgaaaaaggggaagtggccatgggccgcgtggtgaaggtgactcctaaggag
gggctgactgtctccttcccctttgggaagatcggaaaagtcagtgtatttcacgtgagt
gactcctactcagagacgcccctggaagactttgtcccccagaagattgtcaggtgttat
gtcctgtctgctacaggccacgtgttgactctgtcactacgatcatccaggacaaaccca
gagacaaagagcaaaataactgatcctgagattaactccatccaggacattcaggaaggg
caactcctgaggggctatgtgaagtctgtccagccacatggtgtgctctttggcctgaag
tgtcagaagaacctagtagagctgtcattcctccccaatgacactgggaagccagatgtg
tttcctgcctccctgggactgccactactaaaacaagaggagaggacagaggaggcagag
gagaacaagcacaaagaagaagagaaggaagaaaagaatcagaaaaggaaagggaagagg
aaccaagaggggcaggagggggtgcagctgcctggtgaggagaagaaagagccccagaaa
ctgcaagcaaaaaagcagggcaagcggcggcgccgggagtctgcaggcgaacaggaaaga
gtgaacaagaagcaaaagaaagctgctccgtcagaggaggacgacagtggtgttgaagtg
tattatcgggaaggagaagaggaggtggaagagatgagtgtactgcctaaggagaagcca
agaaggccagcagaagtgccccggctacagctgtcctctggtttcatttgggacgtgggg
ctagactctctgaccccagccttaccacctcgaggagagagctcagacagcgaggaggac
aacaagccacagcagtccacgcaaaagaaaagcaagaaggaaaggatgttggagaagcag
aaggcagagaaagagttgtcccgcattgaggaggcgctgatggatcctgggcgacagcca
gagtcagcagatgactttgaccgactcttgctgagttcccctaacagctctattctgtgg
ctgcagtacatggccttccacctgcaggccacagaaatcgagaaggcccgggctgtggcc
gagagggctctcaagaccatttccttcagagaggagcaagagaaactgaacgtgtgggtg
gcactgctgaatctagagaacatgtatggctctcaggagtcgctgaccaaggtcttcgag
cgcgctgtgcagtacaatgagcctctcaaggtctttctccacctggctgacatctacaac
aagtcagagaaattccaggaagctggtgaactctacaaccggatgctgaagcgattcagg
caggagaaagctgtctggatcaaatatggtgcctttcttctgcggaggggccaggctgga
gccagtcaccgtgtgatgcagcgagccctggagtgtctgcccaataaagagcatgtggat
gtgattgccaagtttgcccagctggagttccagctgggagatgcggaacgggccaaagcc
atttttgagaatacactgagcacctacccaaagcgtactgatgtctggtcggtttacatc
gacatgaccattaagcatggcagccagaaggaagtccgggacatctttgaacgggttatt
catctcagcctggcccccaagcgaatgaaattcttcttcaagcgctacctggactatgag
aaacaacatggcactgagaaggacgtgcaggcagtaaaggcgaaggccctggaatacgtg
gaagctaagagctctgtgttggaggactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (9)   
   RefSeq(pep) (9)   
DNA sequence (9)   
   RefSeq(nuc) (9)   
Protein domain (8)   
   Pfam (8)   
All databases (50)   

Download RDF
DBGET integrated database retrieval system