KEGG   Canis lupus familiaris (dog): 479112
Entry
479112            CDS       T01007                                 
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X3
  KO
K10754  replication factor C subunit 1
Organism
cfa  Canis lupus familiaris (dog)
Pathway
cfa03030  DNA replication
cfa03410  Base excision repair
cfa03420  Nucleotide excision repair
cfa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    479112 (RFC1)
   03410 Base excision repair
    479112 (RFC1)
   03420 Nucleotide excision repair
    479112 (RFC1)
   03430 Mismatch repair
    479112 (RFC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cfa03032]
    479112 (RFC1)
   03400 DNA repair and recombination proteins [BR:cfa03400]
    479112 (RFC1)
DNA replication proteins [BR:cfa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    479112 (RFC1)
DNA repair and recombination proteins [BR:cfa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     479112 (RFC1)
SSDB
Motif
Pfam: RFC1 BRCT AAA AAA_22 PTCB-BRCT BRCT_2 Rad17 RuvB_N AAA_17 AAA_30 AAA_18 AAA_14 AAA_5 AAA_16 nSTAND3 AAA_33 SKI Zeta_toxin RNA_helicase AAA_7 AAA_19 NTPase_1 TIP49
Other DBs
NCBI-GeneID: 479112
NCBI-ProteinID: XP_005618678
Ensembl: ENSCAFG00000016068
VGNC: 45492
Position
3:75609032..75683153
AA seq 1152 aa
MDIRKFFGVIPSGKKPVTETVKKNEKTKSAEETLKSKKGIKEIKVNSSCKEDDSKQKQPN
KKKRIIYDSDSESEETVQIKNAKKQPEKLPLASKPAKILRQDPVTYISETDEEDDFMCKK
AASKSKENGGSTHSYLGTSNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTGSVQRSDKK
MVASKRKEPSQNADDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKK
AWKDPEERETFSSVQANLSKAGKHKSPHKVKTEQFSDGRKNCSPKKQAKCESLIGSQQHL
KSSPHKIETSPKASSKLALLKKKGESSYKETEPMTSKRKNAVELKGQTKTPKKPKSSPAK
KESISPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIER
DEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTNIIDEDGLLNLIRTMP
GKKSKYEIAVEAEMKKEKSKLERTPQKKDQGKRKISPTKKESESKRSRLTPKKDSSIKSV
KKETSVLWRCLNFEEQVAEETNDDSRARNLAGDSSENKVENLLWVDKYKPTSLKTIIGQQ
GDQSCANKLLRWLQNWHRGPPEDKKRAAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTAS
LVCQELGYSYVELNASDTRSKNSLKEVVAESLNNTSITGFYSTSQHGSDGAAHSVGSKHA
LIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPR
VEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKAD
SHRAKKDIRLGPFDVARKVFAAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYLHVKPVA
AGGDMKKHLMLLSRAADSICDGDLVDRQIRSKQNWSLLPTQAIYASVLPGELMRGYMTQF
PTFPSWLGKHSSTGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSHIRDALVQPLTSQGVE
GVQDVIALMDAYYLMKEDFENIMEISSWGGKPSPFSKLDPKVKAAFTRTYNKEVHLTPYS
LQAVKTPRHSTGPALDSEYNEELIEDDSQSDEKDQDSMETDGMIKKKTKSSKPSKSEKDK
ESRKGKGKSSKK
NT seq 3459 nt   +upstreamnt  +downstreamnt
atggatattcggaaattctttggggttataccaagtggaaagaaacctgtaaccgaaaca
gtaaagaagaatgagaaaacaaagtctgctgaagaaactttaaaatcaaagaaaggaata
aaggaaattaaggtaaatagttcttgtaaagaagatgactctaaacagaagcaaccaaac
aagaaaaagaggatcatctatgattcagattcagaatcagaggagacagtgcagattaaa
aatgccaaaaagcaaccagaaaaattgccattggcctctaaacctgctaaaattctacgc
caggatcccgttacatatatttcagaaacagatgaagaagatgactttatgtgtaagaag
gcagcttctaaatcaaaagagaatggaggatctacacatagttatcttgggacatcaaac
atgaaaaagaatgaagaaaacactaagaccaagaataaacctttatcaccaataaaactt
acccccacgtcagtgcttgattattttggaactgggagtgtccaaagatcagataagaag
atggtagcaagcaaaagaaaagagccttcacagaatgcagatgattccagattaaatgat
gaagccattgccaagcaattgcaacttgatgaggatgcagagttggagagacaactgcat
gaagatgaagagtttgccagaacattagctatgttggatgaagagcccaagaccaaaaag
gcttggaaggacccagaggagcgagaaacgttttcatctgtccaagccaatttaagtaaa
gcaggaaaacataaatctcctcataaagtaaaaacagaacaattttcagatggcaggaag
aactgtagtcctaagaagcaagctaaatgtgaaagtttgataggatctcagcaacatttg
aagtcatcacctcacaaaatagaaacttctccaaaagccagttccaagttggcccttttg
aaaaaaaaaggagagagttcttataaagaaacagagcctatgacttcaaaaagaaaaaat
gctgttgaattaaaaggacagacaaagactcctaagaaacccaaaagttctccagctaaa
aaagagtctataagtcctgaagattctgagaagagacgcacaaattatcaagcgtatcga
agctacttaaatcgagaaggccccaaagccctgggctccaaagaaataccaaagggagct
gaaaattgcttggaaggccttacatttgtaatcacaggagtgctggagtccatcgaacga
gatgaggccaagtctctaattgagcgttatgggggaaaagtaacaggaaatgtcagcaag
aaaacaaactaccttgtcatgggtcgtgatagtggacagtccaagagtgataaggcagca
gccttggggacaaatattattgatgaagatggcctattaaatctgattcgaaccatgcca
ggcaagaagtctaagtacgaaatagcagttgaagctgagatgaagaaagaaaagtccaaa
ttggaaagaacacctcaaaaaaaagaccaaggaaaaagaaaaattagcccaactaagaag
gaatcagaatctaaaagaagtagacttactcccaagaaggacagctctataaagtccgta
aaaaaggaaacaagtgtgctttggagatgcctgaactttgaggagcaggtggctgaggag
acaaatgacgacagccgggctaggaatttggccggtgacagcagtgaaaacaaagtggaa
aatttgctctgggtggataaatataagccaacttctctcaagaccataattggacagcaa
ggtgaccagagctgtgccaacaagctcctacgctggctccaaaattggcacaggggtccc
cctgaagacaagaaacgcgcagcaaagtttggtaagtttgctggcaaagatgatggctct
agttttaaagcagcgctgctctcaggccctccaggtgttggcaagaccaccacagcttct
ttggtttgtcaggaattgggatatagctacgtggaactgaatgcgagtgatactcggagt
aagaatagtttgaaggaggttgttgctgaatcactgaataataccagcatcacaggcttt
tattcaacttctcaacatgggtcagatggagcagcccattcagtaggctcaaaacatgct
cttatcatggatgaagtagatggcatggcaggcaatgaggacaggggaggaattcaggaa
ttaattggcctgataaaacatacaaaaattcccattatttgcatgtgcaatgatagaaat
catcctaagattcgttctttggttcattattgttttgatcttcgttttcaaagacctcga
gttgaacagattaagggtgctatgatgtctattgcatttaaagagggtttgaagatcccg
cctccggctatgaatgaaataattttgggtgccaatcaagatatcagacaggttttacac
aatctgagtatgtggtgtgcacgcagtaaggcactaacctatgaccaggccaaggctgat
tctcatagagccaaaaaggatatcagactgggcccgtttgatgttgcccggaaagtgttt
gcagctggagaggagaccgctcacatgtcacttgtggataagtcagatctcttttttcat
gattattcaatagcacccctcttcgtccaggagaactacttacatgtgaaacctgtagct
gcagggggcgacatgaaaaagcacttgatgcttttaagcagagcagcagatagcatatgt
gatggtgacctagtggaccgtcagatccggagtaagcaaaactggagtcttctgcctaca
caggccatttatgccagtgttcttcctggagagctaatgagggggtacatgacccagttt
cctactttcccaagctggttagggaagcactcatctaccggcaaacacgatcgtattgta
caggatctagcactgcacatgagtctcagaacttattccagcaaaaggactgtaaacatg
gattatctgtcacatataagggatgcacttgtacagcccttgacctcacaaggggtagaa
ggagtacaggatgttattgctcttatggatgcctactacttgatgaaagaagactttgag
aatatcatggaaattagcagctggggagggaaacctagtcccttctccaagctggatccc
aaggtgaaagcagccttcacaagaacctacaataaggaagtccaccttactccatattca
cttcaagcagtaaagacacccagacacagcacaggcccggcactggattctgaatacaat
gaagagttaattgaagatgactctcaatctgatgagaaagaccaagactctatggaaact
gatggaatgatcaagaagaagacaaaatcttcaaagccttcaaaatcagaaaaagataag
gagtccagaaaaggaaaaggaaaaagttcaaagaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (15)   
   RefSeq(pep) (15)   
DNA sequence (15)   
   RefSeq(nuc) (15)   
Protein domain (23)   
   Pfam (23)   
All databases (79)   

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