KEGG   Canis lupus familiaris (dog): 487516
Entry
487516            CDS       T01007                                 
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X3
  KO
K20183  Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cfa  Canis lupus familiaris (dog)
Pathway
cfa04140  Autophagy - animal
cfa04148  Efferocytosis
cfa05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    487516 (VPS39)
   04148 Efferocytosis
    487516 (VPS39)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    487516 (VPS39)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cfa04131]
    487516 (VPS39)
Membrane trafficking [BR:cfa04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    487516 (VPS39)
SSDB
Motif
Pfam: Vps39_2 Vps39_1 CNH Clathrin EcoR124_C
Other DBs
NCBI-GeneID: 487516
NCBI-ProteinID: XP_013965043
Ensembl: ENSCAFG00000010031
VGNC: 48290
UniProt: A0A8C0P521 A0A8I3NYS1
Position
30:complement(9224925..9271967)
AA seq 886 aa
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDAVLTGVASPESGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCA
LNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKEDSDSEKQQQIHHIKNLYAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLCFLVENFKGLA
IPYLEHVIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEY
RRKLLIFLEISGYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTKMAE
EYCHKHYDQNRDGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHS
KLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq 2661 nt   +upstreamnt  +downstreamnt
atgcacgacgccttcgagccagtgccgatcctagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaagaatggcttcttgttggcaccaaacaaggacatcttcttctctat
aggatccgaaaggatgctgtgttaacaggtgtagcatctcctgaaagcggcagttgcaac
aggtttgaagtgacactagagaaatccaataaaaacttctccaaaaagattcagcagatc
catgtggtttcccagtttaagattctggtcagcttgttagaaaataacatttatgttcat
gacctattgacctttcaacaaatcaccacagtttcaaaggcaaagggagcatcactattc
acatgtgacctccaacacacagagactggtgaggaggtattgcggatgtgtgtggccgtg
aaaaagaagctgcagctctatttctggaaggatagggaatttcatgaattgcagggggac
tttagtgtaccagatgtgcccaagtctatggcatggtgtgaaaactccatctgtgtgggt
ttcaagagagactactacctaataagggtggatggaaaagggtccatcaaagagctcttt
ccaacaggaaaacaactggagccgttagttgcacctctggcagatggaaaagtggctgtg
ggtcaggatgatctcaccgtggtgctcaatgaggaggggatctgcacacagaaatgtgcc
ttgaactggacagacatcccagtggccatggagcaccagcctccctacatcattgcagtt
ttgcctcgatatgtggagatccgaacatttgagccaaggcttctggtccagagcattgaa
ttgcaaaggccccgcttcattacctctggaggatcaaacataatctatgtggctagcaat
cattttgtttggagactcattcctgtccccatggcaacccaaatccaacagcttctccag
gacaagcagtttgaattggctctacagctcgcagaaatgaaagaagattcggacagcgaa
aagcagcaacagatccatcacatcaagaacttgtatgccttcaacctcttctgccagaag
cgttttgatgagtccatgcaggtctttgctaagcttggcacagatcctacccatgtgatg
ggcctatacccagacctgctgcccacagactacagaaagcaactgcagtatcctaaccca
ctgccagtgctgtcgggggctgaattggagaaggcacatttagctctgattgactacctg
acacagaaacgaagccaattggtaaagaaactgaatgactctgatcaccagtctagcacc
tcccctctcatggaaggcactccgaccatcaaatcaaagaagaagctattgcaaatcatt
gataccaccctgctcaagtgctacctccatacgaacgtggccttggtggcgcctctgctg
cgcctggagaacaatcactgccacatcgaggagagtgagcatgtgctgaagaaggcgcac
aagtacagtgaactgataatcctgtatgagaagaaggggctccatgagaaagctctgcag
gtgctggtggaccagtccaagaaagcaaactcccctctgaaaggccatgagaggacagtg
cagtatctgcaacatttgggcacagaaaacctgcatttgattttttcgtactcggtatgg
gtgctgcgagacttcccagaggatggcctgaagatatttaccgaagacctcccggaggtg
gaatctctgccacgagaccgagtgctctgcttcttagtggagaattttaagggtctagct
attccttatctggagcatgtcattcacgtttgggaggagacgggctctcgattccacaac
tgcctgatccagctgtactgtgagaaggtgcaaggtctgatgaaggagtatctcctgtcc
ttccctgcaggcaaaactccagtccctgctggagaggaagagggtgagctgggagagtac
cgacggaagctccttatattcttggaaatttctggctactatgatccaggccggctcatc
tgtgactttccttttgatggcctcttagaagagcgtgcactgctgctggggcgcatggga
aagcatgagcaagcgctcttcatctacgtgcacatcctgaaggacacaaagatggctgag
gagtactgccacaagcattacgaccaaaacagagatggcaacaaagatgtgtatctgtcc
ctgctccggatgtacctgtcgccccctagtgttcattgcctgggacccatcaaactggaa
ctgctggagccacaggccaacctccaggctgccctgcaggtcctcgagctgcaccacagc
aagctggacaccactaaggccatcaaccttctaccagcaaacactcagattaatgacata
cgtatctttctggaaaaggtcttggaagaaaatgcacaaaaaaaacggttcaatcaagtg
ctcaagaacctcctccatgcagaatttctgagggtccaggaagagcggattttacaccag
caggtgaagtgcatcatcacagaggagaaggtgtgtatggtgtgtaagaagaagattggg
aacagtgcatttgcaagataccccaatggagtggtcgtgcactacttctgttccaaagag
gtaaacccagccgacacctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (17)   
   UniProt (2)   
   RefSeq(pep) (15)   
DNA sequence (15)   
   RefSeq(nuc) (15)   
Protein domain (5)   
   Pfam (5)   
All databases (55)   

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