KEGG   Canis lupus familiaris (dog): 490529
Entry
490529            CDS       T01007                                 
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1
  KO
K12878  THO complex subunit 1
Organism
cfa  Canis lupus familiaris (dog)
Pathway
cfa03013  Nucleocytoplasmic transport
cfa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    490529 (THOC1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    490529 (THOC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfa03019]
    490529 (THOC1)
   03041 Spliceosome [BR:cfa03041]
    490529 (THOC1)
Messenger RNA biogenesis [BR:cfa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     490529 (THOC1)
Spliceosome [BR:cfa03041]
 Complex C
  Other components
   EJC/TREX
    490529 (THOC1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    490529 (THOC1)
SSDB
Motif
Pfam: efThoc1 Death HsdM_N
Other DBs
NCBI-GeneID: 490529
NCBI-ProteinID: XP_547651
Ensembl: ENSCAFG00000018324
VGNC: 47348
UniProt: A0A8C0NVM3 A0A8I3ML03
Position
7:complement(66535949..66590326)
AA seq 657 aa
MSPTPPLFSLPEARTRFTKSTREALNNKNIKPLLNTFSQLPGSENEKKCTLDQAFRGVLE
EEIINHSSCENVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
ATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWS
LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRVARKRTAPE
DFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENMV
ENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
KTGEDEDEEDNDALLKENESPDVRRDKPVTGEQIEVFASKLGEQWKILAPYLEMKDSEIR
QIECDSEDMKMRAKQLLVAWQDQEGVHATPENLMNALNKSGLSDLAESLTNDNETNS
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgtctccgacgccgccgctcttcagtttgcccgaagcgcggacgcggttcacgaagtct
accagagaggccctcaacaacaaaaatatcaagccattgttgaataccttcagccaatta
cctggcagtgaaaatgaaaaaaaatgtacccttgaccaagctttcagaggtgttctagaa
gaagaaattataaatcattcatcatgtgaaaacgttttagctattatttctcttgctatt
gggggagtaactgaaggtatttgtaccgcatctacaccttttgtattgttgggagatgtt
ttggattgtcttcctctggatcaatgtgacacaatattcacttttgtggaaaaaaatgtt
gctacttggaaatcaaatacattctattctgctgggaaaaattatttactacgtatgtgc
aatgatctcctaagaagattatcaaaatcccagaatacagtcttctgtggacgaattcaa
ctctttttggccaggcttttccctttatctgagaaatcaggtcttaacttgcagagtcaa
tttaatctggaaaatgtcactgttttcaataccaatgagcaggaaagcaccttgggtcag
aagcacactgaggatagagaagaaggaatggatgttgaagaaggtgaaatgggagatgat
gaagctccaacaacttgctccattccaattgactacaacctgtatcgaaaattctggtca
cttcaggattacttcaggaaccctgtgcaatgctatgagaagatttcatggaaaactttt
cttaagtattctgaagaagttctagctgtttttaaaagttataaattagatgatactcaa
gcctcaaggaaaaaaatggaagaattaaaaacaggaggagaacatgtatattttgcaaaa
tttttaacaagtgaaaagttgatggatttgcaactgagcgacagtaactttcgccgacac
atcctgttgcaatatctcattttattccagtatctcaagggacaggtcaaattcaaaagt
tcaaactatgttttaactgatgagcaatcactctggattgaagatactacaaaatcagtt
tatcaactactatctgaaaacccccccgatggagaaagattttcaaagatggtagagcat
atattaaacactgaagaaaactggaactcatggaaaaatgaaggctgcccaagttttgtg
aaagaaagaacatcagacaccaagccaacaagagtagctcgaaagagaacggcaccagag
gactttctagggaaaggacccaacaaaaagattctgatgggaaatgaggagttaacaagg
ctttggaatctctgtcctgataatatggaagcctgcaaatcagaaacaagggaatacatg
ccgactttggaagaattctttgaagaagccattgaacaggcagaccctgaaaacatggtt
gaaaatgaatacaaagctgtgaacaattcaaattatggttggagagccctgagactatta
gcacgaagaagccctcacttcttccagccaaccaaccagcagtttaaaagtttgccagaa
tatcttgaaaacatggtaataaagctagcaaaggaattaccacctccttctgaagaaata
aaaacaggtgaggatgaagatgaggaagataatgatgctttactgaaggaaaatgaaagc
cctgatgttcggcgcgacaaacctgtaacaggggaacagatagaggtgtttgccagtaaa
ctgggtgagcagtggaagatcctggctccctacttggaaatgaaagactcagaaattaga
caaattgagtgtgacagcgaagacatgaagatgagagctaagcagcttctagttgcctgg
caagatcaagagggagtacatgcaacacctgagaatctgatgaacgcactaaataagtcc
ggattaagtgaccttgcagaaagtctaactaatgacaatgagacaaatagttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (3)   
   Pfam (3)   
All databases (35)   

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