KEGG   Canis lupus familiaris (dog): 607950
Entry
607950            CDS       T01007                                 
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Organism
cfa  Canis lupus familiaris (dog)
Pathway
cfa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    607950 (MTREX)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfa03019]
    607950 (MTREX)
   03041 Spliceosome [BR:cfa03041]
    607950 (MTREX)
   03009 Ribosome biogenesis [BR:cfa03009]
    607950 (MTREX)
   03016 Transfer RNA biogenesis [BR:cfa03016]
    607950 (MTREX)
Enzymes [BR:cfa01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     607950 (MTREX)
Messenger RNA biogenesis [BR:cfa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     607950 (MTREX)
Spliceosome [BR:cfa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    607950 (MTREX)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    607950 (MTREX)
Ribosome biogenesis [BR:cfa03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    607950 (MTREX)
Transfer RNA biogenesis [BR:cfa03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    607950 (MTREX)
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C ResIII nSTAND3 AAA_22
Other DBs
NCBI-GeneID: 607950
NCBI-ProteinID: XP_849676
Ensembl: ENSCAFG00000006818
VGNC: 46201
UniProt: A0A8C0RUP3
Position
2:39706168..39808488
AA seq 1042 aa
MADAFGDELFSVFEDDSTTASGTKKDKEKDKGKWKGPPGSAEKGGKRFDGKLQSESTNIG
KTKRDADFEGTDEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLN
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq 3129 nt   +upstreamnt  +downstreamnt
atggcggacgccttcggggatgaactcttcagcgtgttcgaggacgactcgaccaccgcg
tccggaactaaaaaagacaaggagaaagacaaggggaaatggaaggggccgccgggatct
gcggaaaagggcgggaaacgttttgatggtaaattgcagtctgagtcgactaatattgga
aaaaccaagagagatgcagattttgagggcacagatgaacccatttttggaaagaagcct
agggtggaagaatcaataactgaagatttaagtttggcagacttgatgcccagagtcaag
gtacagtccgttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccattcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtatgcgctgagtatgccattgcattagccttaagg
gaaaaacagcgtgtaatatttaccagcccaattaaggctctgagtaaccagaaataccgg
gaaatgtatgaagaatttcaagatgttggtttgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttaagaagtatgctgtacagaggttct
gaagttatgcgagaagtagcatgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgttgtatgggaagaaactattattctgcttcctgacaatgtccactatgtg
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacat
aaacagccttgtcatgtaatttacacagattaccggcctactccattgcagcactacatt
tttccagcagggggagatggcctgcaccttgttgttgatgaaaatggtgacttcagagaa
gataattttaatactgcgatgcaagtacttcgagatgcaggtgatttggcaaaaggagat
cagaaggggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcagcctgtaattattttcagttttagtaagaaggattgtgaa
gcctatgcacttcagatgaccaaattagattttaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgccattgactgcttgtctgatgaagataaaaaactccctcag
gttgaacatgtacttcctcttttgaagcgagggattggtattcaccatggtggtctactt
cctattttgaaagaaactatagaaattctattttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagctagaactgttttatttacaaat
gcccggaaatttgatgggaaagatttcagatggatttcctctggtgaatacattcagatg
tctggtcgggctggaaggaggggaatggatgatagaggaattgtaattcttatggtggat
gaaaagatgagcccaacaattggaaaacagctacttaagggctcagctgatcctctaaat
agtgcttttcatttgacctacaacatggttttgaatttactacgtgtagaagaaattaat
cctgagtacatgttggaaaaatccttttaccagtttcagcattatagagcaattccagga
gtagtagagaaagtaaagaactcagaagaacaatataataaaatagtaataccaaatgag
gaaagcgtcgtcatctattataagattagacagcagcttgccaaactgggtaaagaaatt
gaagaatatgttcacaaaccaaaatactgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagttgaagtacttctg
cgctgcagcaaagaaagtttgaaaaattcagctactgaggctgcaaaaccagctaaacct
gatgaaaaaggagagatgcaggttgttccagtgttggtgcacctcctgtctgctatcagc
agtgttaggctttacattcctaaagacctccggccagtggataatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcctttattagatcctatt
gatgatatgggcattcaggatcaaggactgaaaaaagtcatccagaaagtagaggctttt
gagcatagaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactaaag
aaagcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaagaagg
ttgggatttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgaactccttttaactgagatgatgtttaatggccttttcaatgacctg
tctgcagaacaggcaacggcactcctgagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcggcagaagccaaactggagattgatgaggaaacttacctaaac
tcattcaaacctcacttaatggatgtagtatatacctgggcaacaggcgctacatttgcc
catatctgcaaaatgacagatgtcttcgaaggcagcataattcgttgtatgaggcgccta
gaagaactgcttcgacagatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aacaaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttataa

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