KEGG   Danio rerio (zebrafish): 327197
Entry
327197            CDS       T01004                                 
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04137  Mitophagy - animal
dre04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    327197 (vcp)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    327197 (vcp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    327197 (vcp)
   03009 Ribosome biogenesis [BR:dre03009]
    327197 (vcp)
   04131 Membrane trafficking [BR:dre04131]
    327197 (vcp)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dre04147]
    327197 (vcp)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     327197 (vcp)
Ribosome biogenesis [BR:dre03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    327197 (vcp)
Membrane trafficking [BR:dre04131]
 SNARE
  SNARE associated proteins
   Others
    327197 (vcp)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    327197 (vcp)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   327197 (vcp)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_5 AAA_33 AAA_2 TIP49 AAA_22 AAA_14 RNA_helicase AAA_28 Vps4_C nSTAND3 AAA_18 Parvo_NS1 Mg_chelatase AAA_17 IstB_IS21 ATPase_2 AAA_7 ATPase DUF815 Bac_DnaA ABC_tran AAA_24 NB-ARC ResIII TsaE Zeta_toxin NACHT Sigma54_activat Viral_helicase1 SLFN-g3_helicase bpMoxR KAP_NTPase UFD1 Zot
Other DBs
NCBI-GeneID: 327197
NCBI-ProteinID: NP_958889
ZFIN: ZDB-GENE-030131-5408
Ensembl: ENSDARG00000020008
UniProt: Q7ZU99
Position
5:41510420..41520582
AA seq 806 aa
MASGGESKNDDLSTAILKQKNRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNITWEDIG
GLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKAN
LRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSNQGG
SGPSQGSSGGGGGNVFNEDNDDDLYG
NT seq 2421 nt   +upstreamnt  +downstreamnt
atggcttcgggtggagaatccaaaaacgatgatctttccactgccattctgaagcagaag
aacaggccaaataggttgattgttgatgaatctatcaatgaagacaacagtgttgtgtct
ctctctcaggcgaagatggatgagctgcagctctttaggggtgacacagtgctgctgaag
ggtaagaagagaagggagactgtttgcatcgtcctgtctgatgacacctgctctgatgag
aaggttcgcatgaacagggtggtccgaaacaacctcagggtgcgccttggcgacgtaatc
agtattcagccttgtccagatgtgaagtatggaaaacgcatacatgttctgccaattgat
gataccgtggagggcatcactggcaacctgtttgaggtctatctcaagccttacttcctg
gaggcttacaggccaatccgtaaaggtgatattttccttgtcagaggaggcatgcgtgct
gtggagttcaaagtggtggagactgaccccagcccctactgtattgtggccccagacaca
gtgattcactgtgaaggagaacccatcaagcgagaggatgaggaagagtctctgaatgag
gtgggttatgatgacattggaggggtgagaaaacagcttgcccaaatcaaagaaatggtg
gagcttcctctgagacacccagctctcttcaaggctattggtgtgaagcctccccgtggc
atcctgctgtacggacctcctggaactggaaagacccttattgctcgtgctgtggcaaat
gaaactggagcgttcttcttcctcatcaatggccctgagatcatgagtaaactggcaggt
gaatctgagagtaatttgcgcaaagcttttgaggaagcagagaagaacgcaccagccatc
atctttattgatgaactcgatgctattgcacccaaacgagagaagactcacggtgaggtg
gagaggcgcattgtgtctcagctgctcactctgatggacggactcaagcaaagggctcat
gttatcgttatggcggctaccaacagacctaacagcattgacccagctctcaggcgattt
gggcgctttgacagagaggtggacatcggcattccagatgcaactggaagacttgagata
cttcagatccacactaaaaacatgaagcttgctgatgatgttgatctggagcaggtggct
aatgagacccatggtcatgttggtgctgatctggctgccctttgctcagaggctgccttg
caagccattcgtaagaaaatggacctcattgatttggaggacgagaccattgacgcagag
gttatgaactccttggctgtaacaatggatgactttaggtgggctcttagccagagcaac
ccatctgccctcagagagactgttgtggaggtgcctaacatcacctgggaggatatcggt
ggccttgatgacgtcaagagagagctgcaggagctggtgcagtacccagtggagcatcca
gacaaattcctcaagtttggcatgactccatccaagggtgtgctgttctatggaccacca
ggttgtggtaaaacccttctggccaaggccatcgccaatgagtgccaggccaacttcatc
tcaatcaagggcccagaactgctcactatgtggtttggagaatcagaggcgaatgtccgt
gaaatctttgacaaggctcgtcaggctgctccttgtgtgctcttctttgatgaattggac
tccattgctaaggctcgtggtggaaatgttggtgatggtggcggcgcagctgacagagtc
attaaccagatcctcacagaaatggatggaatgtccagcaagaagaacgtcttcatcatt
ggggccaccaacagaccagacatcattgaccctgccatcctcaggcccggacgtttggac
caactcatctacatcccactgcccgacgagaagtctcgcattgccattcttaaagctaac
ctcaggaagtctccaatctcaaaggatgtggacctggacttcttggccaagatgaccaat
ggcttttcaggtgctgacttgactgagatctgccagagagcctgtaaactggccatccgc
gagtccattgagaatgagatcagacgggaacgtgagaggcagaccaatccttctgcaatg
gaggtggaagaggatgacccagtgcctgagatcaggaaggaccatttcgaggaggccatg
cgctttgcccgccgctccgtcagcgataatgacatccgcaaatatgagatgttcgcacag
accctgcaacagagcagaggctttggcagtttcagattcccatccagtaaccaaggagga
agtggaccaagtcagggctcttctggtggtggaggcggcaacgtcttcaatgaggacaac
gatgatgatctttacggataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (89)   
   KEGG ORTHOLOGY (1)   
   RefGene (83)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (40)   
   Pfam (40)   
All databases (149)   

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