KEGG   Danio rerio (zebrafish): 386807
Entry
386807            CDS       T01004                                 
Symbol
rab5c
Name
(RefSeq) ras-related protein Rab-5C
  KO
K07889  Ras-related protein Rab-5C
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04137  Mitophagy - animal
dre04144  Endocytosis
dre04145  Phagosome
dre04148  Efferocytosis
dre05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:dre00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    386807 (rab5c)
   04145 Phagosome
    386807 (rab5c)
   04137 Mitophagy - animal
    386807 (rab5c)
   04148 Efferocytosis
    386807 (rab5c)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    386807 (rab5c)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:dre04131]
    386807 (rab5c)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dre04147]
    386807 (rab5c)
   04031 GTP-binding proteins [BR:dre04031]
    386807 (rab5c)
Membrane trafficking [BR:dre04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    386807 (rab5c)
 Endosome - Lysosome transport
    386807 (rab5c)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   386807 (rab5c)
  Exosomal proteins of other body fluids (saliva and urine)
   386807 (rab5c)
  Exosomal proteins of colorectal cancer cells
   386807 (rab5c)
  Exosomal proteins of bladder cancer cells
   386807 (rab5c)
GTP-binding proteins [BR:dre04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    386807 (rab5c)
SSDB
Motif
Pfam: Ras Roc Arf MMR_HSR1 GTP_EFTU RsgA_GTPase Gtr1_RagA AAA_16 MCR_beta BrnT_toxin
Other DBs
NCBI-GeneID: 386807
NCBI-ProteinID: NP_958909
ZFIN: ZDB-GENE-031118-30
Ensembl: ENSDARG00000026712
UniProt: Q7ZVP2
Position
3:17615573..17651855
AA seq 221 aa
MAGRGGPARTNGAAPVGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFL
TQTLCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFTRAKNWVKEL
QRQASPNIVIALAGNKADLANKRAVDFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIA
KKLPKSEPQGGAGSGGRARGGVDLQETAPQGRSGQCCGGGN
NT seq 666 nt   +upstreamnt  +downstreamnt
atggcggggcgaggtggaccagcgcggaccaacggtgccgcccccgtcgggaacaaaatc
tgccagtttaagcttgtgttgctgggagagtctgcagtaggcaagtccagcctggtgctg
cgcttcgtcaaaggccagtttcacgagtaccaggagagcaccattggagctgctttcctc
acacagacactctgcttggacgatacgacagtaaagtttgagatttgggacacggccgga
caggagcggtatcacagtttggcccctatgtattacagaggagcccaggcagccatcgtc
gtctacgacattactaacacagacacattcactagagcaaagaactgggtgaaggagctg
cagcgccaggccagtccaaatatcgttattgctctggcaggcaacaaagcagatctggcc
aacaagagagccgttgactttcaggaggcccaggcatacgcagatgacaacagcctactc
ttcatggagacgtctgcaaagaccgccatgaacgtcaatgagatcttcatggctatcgcc
aagaagcttccgaaaagcgagccgcagggtggagcgggcagcgggggacgggcccgagga
ggggtggacttacaggagacggcgcctcagggaagaagcggccagtgctgtggaggcgga
aactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (10)   
   Pfam (10)   
All databases (45)   

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