KEGG   Danio rerio (zebrafish): 393562
Entry
393562            CDS       T01004                                 
Symbol
vps28
Name
(RefSeq) vacuolar protein sorting-associated protein 28 homolog
  KO
K12184  ESCRT-I complex subunit VPS28
Organism
dre  Danio rerio (zebrafish)
Pathway
dre04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:dre00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    393562 (vps28)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:dre04131]
    393562 (vps28)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dre04147]
    393562 (vps28)
Membrane trafficking [BR:dre04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-I complex
    393562 (vps28)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   393562 (vps28)
  Exosomal proteins of other body fluids (saliva and urine)
   393562 (vps28)
  Exosomal proteins of colorectal cancer cells
   393562 (vps28)
  Exosomal proteins of bladder cancer cells
   393562 (vps28)
SSDB
Motif
Pfam: VPS28
Other DBs
NCBI-GeneID: 393562
NCBI-ProteinID: NP_956884
ZFIN: ZDB-GENE-040426-1527
Ensembl: ENSDARG00000103203
UniProt: Q6PH25
Position
19:46222430..46238624
AA seq 223 aa
MFHGIPASGVMGGAPANKPELYEEVKLYKNAREREKYDNMAELFAVVKTLQALEKAYIKD
CVTPNEYTGACSRLLVQYKAAFKQVQGSDVGSIDDFCRKYRLDCPLAMERIKEDRPITIK
DDKGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSNMPPDSEAKDK
VSLWLTTLSSMSASDELDDSQVRQMLFDLESAYNAFNRFLHSS
NT seq 672 nt   +upstreamnt  +downstreamnt
atgtttcatggaatacctgcatctggagtgatgggaggagctcctgccaacaagccagaa
ctgtatgaggaagtgaagttgtacaaaaatgccagagaaagggaaaagtatgacaacatg
gcagagctgtttgctgttgtcaaaacactccaggccctggaaaaggcctacattaaagac
tgcgtgactccaaatgagtacacaggagcatgctccagattgcttgtccagtataaggct
gctttcaaacaagtccaggggtcagatgtgggctccatcgacgacttttgtcgaaaatac
aggctggactgtccgctggccatggagcgaatcaaagaggaccgaccgatcaccattaag
gatgacaagggcaacctgaatcgctgcattgcagacatcgtttcactttttatcacagta
atggacaaacttcgacttgaaattcgtgccatggatgagatccagcctgacctgagagag
ctgatggagaccatgaacaggatgagcaacatgcctccagattcagaggccaaagacaaa
gtcagcctctggttgaccacactgagcagcatgtctgcgtctgatgagctggacgactct
caggttcgccagatgctcttcgatctggagtctgcatacaacgccttcaatcgtttccta
cactcctcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   ZFIN (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (39)   

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