KEGG   ENZYME: 1.5.7.3
Entry
EC 1.5.7.3                  Enzyme                                 
Name
N,N-dimethylglycine/sarcosine dehydrogenase (ferredoxin);
ddhC (gene name);
dgcA (gene name)
Class
Oxidoreductases;
Acting on the CH-NH group of donors;
With an iron-sulfur protein as acceptor
Sysname
N,N-dimethylglycine/sarcosine:ferredoxin oxidoreductase (demethylating)
Reaction(IUBMB)
(1) N,N-dimethylglycine + 2 oxidized ferredoxin + H2O = sarcosine + formaldehyde + 2 reduced ferredoxin + 2 H+ [RN:R13028];
(2) sarcosine + 2 oxidized ferredoxin + H2O = glycine + formaldehyde + 2 reduced ferredoxin + 2 H+ [RN:R13029]
Reaction(KEGG)
R13028 R13029
Substrate
N,N-dimethylglycine [CPD:C01026];
oxidized ferredoxin [CPD:C00139];
H2O [CPD:C00001];
sarcosine [CPD:C00213]
Product
sarcosine [CPD:C00213];
formaldehyde [CPD:C00067];
reduced ferredoxin [CPD:C00138];
H+ [CPD:C00080];
glycine [CPD:C00037]
Comment
This bacterial enzyme is involved in degradation of glycine betaine. The enzyme contains non-covalently bound FAD and NAD(P) cofactors, and catalyses the demethylation of both N,N-dimethylglycine and sarcosine, releasing formaldehyde and forming glycine as the final product. The enzyme can utilize both NAD+ and NADP+, but the catalytic efficiency with NAD+ is ~5-fold higher. The native electron acceptor of the enzyme is a membrane-bound clostridial-type ferredoxin, which transfers the electrons to an electron-transfer flavoprotein (ETF).
History
EC 1.5.7.3 created 2022
Pathway
ec00260  Glycine, serine and threonine metabolism
ec01100  Metabolic pathways
Orthology
K21833  N,N-dimethylglycine/sarcosine dehydrogenase
Genes
PGELG71_22415
IZHFEM41_01300(dgcA)
SMAFD781_3032
SRZAXX16_2052
SERMCLM71_16065
SRHZFO014_18215(dgcA)
PANTPSNIH1_15555
PERLAC65_09540(dgcA)
VNAPN96_22360
VEJVEJY3_21686
VGABSQ33_01865
VSRVspart_01898(stcD)
VOSKNV97_01650(dgcA)
VRURND59_13090(dgcA)
GKDK6Q96_18055
PAEPA5398(dgcA)
PAEVN297_5583
PAEIN296_5583
PAUPA14_71260
PAPPSPA7_6185
PAGPLES_57941
PAFPAM18_5518
PNCNCGM2_6171
PAEBNCGM1900_6249
PDKPADK2_28725
PSGG655_28390
PRPM062_28440
PAEPPA1S_29170
PAERPA1R_gp3331
PAEMU769_29670
PAELT223_29630
PAESSCV20265_6128
PAEUBN889_05992
PAEGAI22_04820
PAECM802_5581
PAEOM801_5448
PMYPmen_0495
PMKMDS_0532
PREPCA10_04090(dgcA)
PPSEBN5_0385
PFUWKF707C_3660
PCQPcP3B5_61330(stcD_2)
PMUIG4G71_03595(dgcA)
PNTG5B91_31770(dgcA)
PPAAB7D75_28000
PPUPP_0310(dgcA)
PPFPput_0331
PPGPputGB1_0333
PPWPputW619_4897
PPTPPS_0304
PPBPPUBIRD1_0340
PPIYSA_05623
PPXT1E_2558(stcD2)
PPUHB479_02000
PPUTL483_01570
PPUNPP4_03370(dgcA)
PPUDDW66_0315
PFVPsefu_4242
PMONX969_27750
PMOTX970_27365
PPJRK21_04713
PORAPT59_00705
PMOLCLJ08_11050
PALDLU682_001475(dgcA)
PIXRIN61_13375(dgcA)
PMOSO165_025460
PSTPSPTO_0396
PSBPsyr_4782
PSYRN018_01560
PSPPSPPH_4811(noxB)
PSAVPSA3335_01740
PAMGBKM19_027705
PCIPCH70_04930
PAVLBKM03_02260
PVDCFBP1590_0517(stcD)
PCABJGS08_24535(dgcA)
PCOFPOR16_23525(dgcA)
PTREI9H09_23365(dgcA)
PSYIMME58_24420(dgcA)
PASTN015_24555(dgcA)
PLIJKQP88_02430(dgcA)
PFLPFL_5740
PPRCPFLCHA0_c56930(stcD2)
PPROPPC_5686
PFEPSF113_5447(dgcA)
PFNHZ99_15425
PFOPfl01_5223
PFSPFLU_5664
PFCPflA506_4960
PPZH045_18655
PFBVO64_2548
PMANOU5_3954(noxB)
PTVAA957_16720
PCGAXG94_13120
PVRPverR02_29065
PAZOAYR47_04475
POIBOP93_24090
PRXHRH33_24920(dgcA)
PMEDE3Z27_26120(dgcA)
PKRAYO71_27980
PMUDNCTC8068_04958
PTOLI7845_26660(dgcA)
PFWPF1751_v1c50890
PFFPFLUOLIPICF710545
PFXA7318_25030
PENPSEEN5176
PLULFOB45_26000(dgcA)
PBAPSEBR_a5226
PBCCD58_27435
PPUUPputUW4_05025
PDRH681_24505
PSVPVLB_23735
PSKU771_29330
PKCPKB_5734(stcD)
PCHEY04_31905
PCZPCL1606_05170
PCPJM49_02700
PCHPC4K32_5824
PFZAV641_01830
PLQAA042_08150
PALKPSAKL28_03410
PRHLT40_17800
PSWLK03_04145
PPVNJ69_17025
PSESPSCI_2140
PSEMTO66_29060
PSECCCOS191_5017(stcD)
PPSYAOC04_22015
PSOSPOS17_5676
PFKPFAS1_13565
PANRA7J50_5390
PPSLBJP27_13655
PSETTHL1_354
PSILPMA3_27995
PYMAK972_0267
PKEDLD99_26630(dgcA)
PALLUYA_02255
PUMHGP31_28895(dgcA)
POJPtoMrB4_04560(dgcA)
PGGFX982_01197
PPSHG5J76_04795(dgcA)
PGYAWU82_08770
PLALFXN65_01940(dgcA)
PSEJHNQ25_22040(dgcA)
PVKEPZ47_27555(dgcA)
PEZHWQ56_26670(dgcA)
PBZGN234_20655(dgcA)
PKHJLK41_02335(dgcA)
PTYJWV26_13120(dgcA)
PMAOPMYSY11_3924(stcD)
PATAJWU58_02930(dgcA)
PDWBV82_1803(dgcA)
PZEHU754_027910(dgcA)
PMOEHV782_026950(dgcA)
PSEPC4K39_3921
PPIIQL104_29060(dgcA)
PVWHU752_030240(dgcA)
PTRTHU722_0027315(dgcA)
PXAKSS93_00165(dgcA)
PSAMHU731_013430(dgcA)
PTZHU718_028145(dgcA)
PQIKH389_25140(dgcA)
PSHHHU773_025870(dgcA)
PXNHU772_001665(dgcA)
PHVHU739_020110(dgcA)
PPRGHU725_001510(dgcA)
PANHHU763_001435(dgcA)
PASGKSS96_26465(dgcA)
PFAKKSS94_01780(dgcA)
PMUYKSS95_01400(dgcA)
PMAMKSS90_01665(dgcA)
PAZEKSS91_26680(dgcA)
PALVKSS97_26850(dgcA)
PORYEJA05_01680(dgcA)
PWZJ7655_02545(dgcA)
PTKEXN22_25720(dgcA)
PTWTUM18999_06200(dgcA)
PZAHU749_027645(dgcA)
PIEHU724_026060(dgcA)
PTAENCTC10697_00384
PGFJ0G10_28490(dgcA)
PCAVD3880_12870(dgcA)
PJUL1P09_01410(dgcA)
PHFNLY38_02470(dgcA)
PIZLAB08_R56200(dgcA)
PPEGKUA23_27700(dgcA)
PSIINF676_25020(dgcA)
PSIHLOY51_01775(dgcA)
PCASLOY40_26835(dgcA)
PFITKJY40_28000(dgcA)
PASILG197_06665(dgcA)
PKMPZ739_01575(dgcA)
PNBNK667_29970(dgcA)
PSOAPSm6_25150(dgcA)
PTAIICN73_04975(dgcA)
PKKQQ992_01520(dgcA)
PKJQ1W70_12375(dgcA)
PHYGJTY93_25095(dgcA)
PHOMKJF94_24280(dgcA)
PCHEQYM18_10110(dgcA)
PCUCPSH97_25865(dgcA)
PTRLOU419_28090(dgcA)
PPAELDL65_08795(dgcA)
PPAOK3169_27720(dgcA)
PRHZCRX69_24290
PSJYAA098_26035
PSKUKUIN1_47880
PSTTCH92_03690
PDENF1C79_23715(dgcA)
MBSMRBBS_0429(stcD)
MPQABA45_02005
MANPEHN06_09930(dgcA)
CPSCPS_4017
ASPAOR13_3424
ASQAVL57_01670
AAWAVL56_00480
ALEAV939_00485
ALZAV940_00485
SHAILMH63_05245
CSACsal_0990
CCAGSR908_12445(dgcA)
HELHELO_3460(hpbA)
HCSFF32_08235
HAKKO116_00519
HAMHALO0494
HHUAR456_15510
HCOLOKO_00456(stcD_1)
HALOBWR19_03885
HBEBEI_0788
HAFC8233_08970
HSVHNO53_20925(dgcA)
HPROLMS44_21065(dgcA)
HBHE4T21_03715(dgcA)
HBPHPTD01_748
HALFQEN58_02005(dgcA)
HHAOQWG60_12990(dgcA)
HASOB2G49_16400
HASHHXW73_15835(dgcA)
HALKCUU95_03940
HVNEI420_01900(dgcA)
HOLHORIV_66580(dgcA)
HPIZGYM47_05680(dgcA)
HNPSR894_19230(dgcA)
HTTHZS52_07110(dgcA)
HCAMI4484_20285(dgcA)
HSXHNO51_20370(dgcA)
HTXEKK97_22845(dgcA)
CMAIBFX80_15020
CAMHLCW13_02225(dgcA)
COBECLAM6_04360(dgcA)
COBBH2O77_02115(dgcA)
KUSB9G99_08085
KMAB9H00_06870
KUYFY550_05305
SAJSQO259_04745(dgcA)
MMWMmwyl1_2724
MMEMarme_1696
MPCMar181_1364
MPRIMP3633_1467
MARDIBG28_12550(dgcA)
MFOIJSY38_16715
MPRFJ8N69_14255(dgcA)
MRHIKDW99_07765(dgcA)
MPONMACH16_19290(dgcA)
MARSA8C75_03325
MRZKDW95_12985(dgcA)
NJPNEJAP_2361
NIKF5I99_12295(dgcA)
AJPAMJAP_2392
GSNYC6258_01444
LLPGH975_07540
OCEGU3_07870
OPEPU634_04515(dgcA)
ZDFAN401_07360
CRZD1345_07550
PSENH8B_1395
AMAHDLM_3257
AQSDKK66_10805
RSORSp0058(stcD)
RPUCDC45_17870
REUReut_B4819
CUKKB879_15025
BMABMAA0474
BMVBMASAVP1_0707
BMLBMA10229_1003
BMNBMA10247_A1976
BMALDM55_4057
BMAEDM78_3533
BMAQDM76_4754
BMAIDM57_13145
BMAFDM51_4199
BMAZBM44_4017
BMABBM45_4794
BPSBPSS0550
BPMBURPS1710b_A2110(stcD)
BPLBURPS1106A_A0743
BPDBURPS668_A0831
BPSEBDL_3778
BPSMBBQ_5644
BPSUBBN_3950
BPSDBBX_5615
BPZBP1026B_II0608
BPQBPC006_II0788
BPKBBK_3941
BPSHDR55_4801
BPSABBU_5496
BPSOX996_3729
BUTX994_4069
BTEBTH_II1865
BTQBTQ_5149
BTJBTJ_3777
BTZBTL_4635
BTDBTI_5379
BTVBTHA_5594
BTHEBTN_4274
BTHMBTRA_3819
BTHADR62_4323
BTHLBG87_4606
BOKDM82_4654
BOCBG90_5939
BUUWS70_20250
BSAVWS86_21435
BHGI6G56_25280
BUDAQ610_27895
BVIBcep1808_3420
BVEAK36_3341
BURBcep18194_B0574
BCMBcenmc03_5203
BCHBcen2424_5082
BCJBCAM2323
BCENDM39_5541
BCEWDM40_3008
BCEOI35_6214
BAMBamb_4494
BACBamMC406_5019
BMJBMULJ_04968(fadH)
BMUBmul_3549
BMKDM80_4938
BMULNP80_4988
BCTGEM_3362
BCEDDM42_5667
BCEPAPZ15_27485
BDLAK34_3471
BPYRABD05_23990
BCONNL30_00900
BUBBW23_3477
BDFWI26_24455
BLATWK25_27610
BTEIWS51_08695
BSEMWJ12_31515
BPSLWS57_02595
BMECWJ16_29950
BSTGWT74_30440
BSTLBBJ41_25495
BANNJFN94_29470
BARINLX30_25610
BAENL3V59_26175
BGLbglu_2g05850
BGUKS03_5330
BUGBC1001_5840
BGFBC1003_5879
BGDbgla_2g07620
BGOBM43_4381
BYIBYI23_B012570
BUKMYA_3043
BUEBRPE67_BCDS16350
BULBW21_5061
BUQAC233_33650
BGPBGL_2c07660
BPLAbpln_2g08530
BUMAXG89_19765
BUIAX768_29530
BURKDM992_23120
BXEBxe_B1582
BXBDR64_6885
BPHBphy_3300
BGEBC1002_3852
BPXBUPH_00032
BPYBphyt_5066
BUZAYM40_25840
BFNOI25_4013
BCAIK788_0002717
PSPWBJG93_26815
PARBCJU94_21610
PHSC2L64_26935
PTERC2L65_21430
PGPCUJ91_23990
PCJCUJ87_20320
PTSCUJ90_31795
PCAFDSC91_001503
PMEGFNZ07_10365
PTROG5S35_22680
PGISI6I06_22250
PACPFAZ97_18780
PDIOPDMSB3_1498.1(stcD)
PBRYNDK50_29200
PSAAQEN71_08325
PKFRW095_22310
PBONQS306_15570
PPAIE1956_31530
PLGNCTC10937_00373
CABASBC2_55250(stcD_2)
BUOBRPE64_BCDS13790
CABKNK8_29680
TVLFAZ95_23260 FAZ95_30360
TCARU0034_18675
ASWCVS48_01160
ACHRC2U31_25560
ACHBDVB37_04635
RHGEXZ61_17750
VEIVeis_4053
SNNEWH46_19365
CFUCFU_3103(stcD)
CARELT85_1457(dgcA)
CPRACPter91_1409
GLCJQN73_15180
MEHM301_1293
APETToN1_44490
AZDCDA09_10900
AZCAZC_1176
STARG3545_24380
SNOSnov_3021
ANCGBB76_09045
APRAG3A50_06260
APOLK9D25_09820
MEAMex_1p4118
MDIMETDI4710
MEXMext_3746
MCHMchl_4041
MPOMpop_4001
MZAB2G69_00545
MRDMrad2831_2478
MNOMnod_3398
METAY590_18605
MAQUMaq22A_c26620(nemA)
METDC0214_20855
MTEADK419_22045
MINDmvi_08010(dgcA)
BBARRHAL1_04066(stcD)
HMCHYPMC_1863
HDIHDIA_0070(stcD)
AUAM673_09360
AALAIGS74_09265
AALMLUX29_10335
JIEOH818_05320
SECHB18_08780
GBEGbCGDNIH1_0073
GBHGbCGDNIH2_0073
GBCGbCGDNIH3_0073
GBSGbCGDNIH4_0073
ACRAcry_1000
AMVACMV_08870
KSCCD178_02798(stcD_2)
AACEA0U92_04510
RAPRHOA_0379(stcD)
NGUQN315_11860
AZLAZL_c01790
ALIAZOLI_p10873
AOZHUE56_08845
AZSE6C72_18165
SKTIGS68_24780
SMUCJL100_026635
SROEJL101_024785
PARHI5S86_27315(dgcA)
 » show all
Reference
1  [PMID:17951379]
  Authors
Wargo MJ, Szwergold BS, Hogan DA
  Title
Identification of two gene clusters and a transcriptional regulator required for Pseudomonas aeruginosa glycine betaine catabolism.
  Journal
J Bacteriol 190:2690-9 (2008)
DOI:10.1128/JB.01393-07
  Sequence
Reference
2  [PMID:32631860]
  Authors
Yang T, Shao YH, Guo LZ, Meng XL, Yu H, Lu WD.
  Title
Role of N,N-Dimethylglycine and Its Catabolism to Sarcosine in Chromohalobacter salexigens DSM 3043.
  Journal
Appl Environ Microbiol 86:e01186-20 (2020)
DOI:10.1128/AEM.01186-20
  Sequence
Other DBs
ExplorEnz - The Enzyme Database: 1.5.7.3
IUBMB Enzyme Nomenclature: 1.5.7.3
ExPASy - ENZYME nomenclature database: 1.5.7.3
BRENDA, the Enzyme Database: 1.5.7.3

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