Entry
Name
[ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase;
RimO;
[ribosomal protein S12]-Asp89:sulfur-(sulfur carrier),S-adenosyl-L-methionine C3-methylthiotransferase;
[ribosomal protein S12]-L-aspartate89:sulfur-(sulfur carrier),S-adenosyl-L-methionine C3-methylthiotransferase
Class
Transferases;
Transferring sulfur-containing groups;
Transferring alkylthio groups
BRITE hierarchy
Sysname
[ribosomal protein uS12]-L-aspartate89:sulfur-(sulfur carrier),S-adenosyl-L-methionine C3-(methylsulfanyl)transferase
Reaction(IUBMB)
L-aspartate89-[ribosomal protein uS12] + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + reduced acceptor = 3-(methylsulfanyl)-L-aspartate89-[ribosomal protein uS12] + S-adenosyl-L-homocysteine + (sulfur carrier) + L-methionine + 5'-deoxyadenosine + oxidized acceptor (overall reaction) [RN:
R10652 ];
(1a) S-adenosyl-L-methionine + L-aspartate89-[ribosomal protein uS12] + sulfur-(sulfur carrier) = S-adenosyl-L-homocysteine + L-aspartate89-[ribosomal protein uS12]-methanethiol + (sulfur carrier);
(1b) L-aspartate89-[ribosomal protein uS12]-methanethiol + S-adenosyl-L-methionine + reduced acceptor = 3-(methylsulfanyl)-L-aspartate89-[ribosomal protein uS12] + L-methionine + 5'-deoxyadenosine + oxidized acceptor
Reaction(KEGG)
Substrate
L-aspartate89-[ribosomal protein uS12];
sulfur-(sulfur carrier);
S-adenosyl-L-methionine [CPD:
C00019 ];
reduced acceptor [CPD:
C00030 ];
L-aspartate89-[ribosomal protein uS12]-methanethiol
Product
3-(methylsulfanyl)-L-aspartate89-[ribosomal protein uS12];
S-adenosyl-L-homocysteine [CPD:
C00021 ];
(sulfur carrier);
L-methionine [CPD:
C00073 ];
5'-deoxyadenosine [CPD:
C05198 ];
oxidized acceptor;
L-aspartate89-[ribosomal protein uS12]-methanethiol
Comment
This bacterial enzyme binds two [4Fe-4S] clusters [2,3]. A bridge of five sulfur atoms is formed between the free Fe atoms of the two [4Fe-4S] clusters [6]. In the first reaction the enzyme transfers a methyl group from AdoMet to the external sulfur ion of the sulfur bridge. In the second reaction the enzyme catalyses the reductive fragmentation of a second molecule of AdoMet, yielding a 5'-deoxyadenosine radical, which then attacks the methylated sulfur atom of the polysulfide bridge, resulting in the transfer of a methylsulfanyl group to aspartate89 [5,6]. The enzyme is a member of the superfamily of S-adenosyl-L-methionine-dependent radical (radical AdoMet) enzymes.
History
EC 2.8.4.4 created 2014, modified 2014, modified 2023
Orthology
K14441 ribosomal protein S12 methylthiotransferase
Genes
CVR : CHLNCDRAFT_133325 CHLNCDRAFT_133327
MPP : MICPUCDRAFT_49392(JGI:MicpuC2_49392)
ECOO : ECRM13514_0912(rimO)
ECOH : ECRM13516_0867(rimO)
ELR : ECO55CA74_05180(rimO)
EDJ : ECDH1ME8569_0787(yliG)
ECOI : ECOPMV1_00837(rimO)
SETC : CFSAN001921_12745(rimO)
SEEN : SE451236_10295(rimO)
SENH : CFSAN002069_04590(rimO)
SEEH : SEEH1578_13650(rimO)
SENJ : CFSAN001992_07180(rimO)
SEEC : CFSAN002050_10845(rimO)
SEEB : SEEB0189_015095(rimO)
SENC : SEET0819_11230(rimO)
REE : electrica_03467(rimO)
RTG : NCTC13098_05146(rimO_1) NCTC13098_05147(rimO_2)
CLAP : NCTC11466_01434(rimO)
KIE : NCTC12125_02150(rimO)
BAGE : BADSM9389_13810(rimO)
AHN : NCTC12129_01770(rimO)
METY : MRY16398_39180(rimO)
PSHI : SAMEA2665130_2170(rimO)
PAQU : DMB82_0008660(rimO)
DIC : Dpoa569_002159(rimO)
PRJ : NCTC6933_03046(rimO)
ANS : ArsFIN_36990(rimO_1)
LRI : NCTC12151_01995(rimO)
HPIT : NCTC13334_00678(rimO)
HHZ : NCTC10839_00560(rimO)
HAEG : NCTC8502_00453(rimO)
PDAG : 4362423_01720(rimO)
ADP : NCTC12871_00646(rimO)
ALIG : NCTC10568_01998(rimO)
ASEG : NCTC10977_00229(rimO)
AVT : NCTC3438_00007(rimO)
PAET : NCTC13378_00064(rimO)
XFU : XFF4834R_chr27320(rimO)
XPH : XppCFBP6546_22215(rimO)
XHD : LMG31886_16050(rimO_2)
SACZ : AOT14_23780(rimO_2)
LLZ : LYB30171_01589(rimO)
VPL : SA104470976_00210(rimO)
PAEB : NCGM1900_1804(yehS)
PPUD : DW66_3502 DW66_4457
PSAV : PSA3335_06985(rimO)
PVD : CFBP1590__3997(rimO)
PPRC : PFLCHA0_c12820(rimO)
PMUD : NCTC8068_04173(rimO)
PFW : PF1751_v1c11520(rimO)
PFF : PFLUOLIPICF702350(rimO)
PTRT : HU722_0007095(rimO)
PTW : TUM18999_45720(rimO)
PTAE : NCTC10697_01069(rimO)
MSHE : MAALD49_27090(rimO)
PSYC : DABAL43B_1993(rimO)
MCAT : MC25239_00710(rimO)
MCUN : NCTC10297_01682(rimO)
SCAA : TUM17387_33860(rimO)
SALH : HMF8227_01776(rimO)
LLG : 44548918_00725(rimO)
LJR : NCTC11533_00833(rimO_1)
LCJ : NCTC11976_01366(rimO)
LWA : SAMEA4504053_1004(rimO)
LSS : NCTC12082_02909(rimO)
LADL : NCTC12735_01201(rimO)
LANT : TUM19329_28150(rimO)
MISZ : MishRS11D_41000(rimO)
TIB : THMIRHAM_12590(rimO)
TSE : THMIRHAS_11890(rimO)
TZO : THMIRHAT_11060(rimO)
TFRI : Thiofri_00928(rimO)
TNI : TVNIR_0228(rimO_[H])
GAI : IMCC3135_22795(rimO_2)
THIC : TspCOW1_26530(rimO)
AEL : NCTC12917_01222(rimO)
CHJ : NCTC10426_00511(rimO)
REH : H16_A1444(h16_A1444)
BUE : BRPE67_ACDS15680(rimO)
PLG : NCTC10937_01516(rimO)
LMIR : NCTC12852_01834(rimO)
BTRM : SAMEA390648701458(rimO)
AXX : ERS451415_05857(rimO)
PVAC : HC248_02351(rimO_2)
LIM : L103DPR2_02063(rimO_3)
LIH : L63ED372_01562(rimO_2)
URU : DSM104443_02567(rimO)
UPL : DSM104440_02297(rimO)
FPHO : SHINM1_010870(rimO)
BSW : IY71_00775 IY71_13895
BSEP : HAP48_0038175(rimO)
BCAN : BcanWSM471_20695(rimO)
VGO : GJW-30_1_03169(rimO)
BHS : BM1374165_00925(rimO)
BTX : BM1374166_01094(rimO)
BEZ : NCTC12898_00714(rimO)
MAQU : Maq22A_c18355(miaB)
MMES : MMSR116_01055(rimO)
MTUN : MTUNDRAET4_0329(yliG)
FIL : BN1229_v1_1904(yliG)
FIY : BN1229_v1_1907(yliG)
PLEO : OHA_1_00949(rimO_1)
TSV : DSM104635_02483(rimO)
RLI : RLO149_c030500(rimO)
PHP : PhaeoP97_02307(rimO)
PPIC : PhaeoP14_02222(rimO)
SINL : DSM14862_02451(rimO)
SPSE : SULPSESMR1_00432(rimO)
RMM : ROSMUCSMR3_02480(rimO)
AHT : ANTHELSMS3_00732(rimO)
LALG : LentiSH36_00597(rimO)
LVS : LOKVESSMR4R_00478(rimO)
AALK : LGT41_0001095(rimO)
SBIN : SBA_ch1_20820(rimO)
SFLA : SPHFLASMR4Y_03025(rimO)
HPO : HMPREF4655_20866(rimO)
HPX : HMPREF0462_0676(rimO)
HCL : NCTC13205_00939(rimO)
HSH : NHP194022_07980(rimO)
HPUL : NCTC13154_01688(rimO)
SULG : FJR48_09550(rimO) FJR48_11945(rimO) FJR48_12080(rimO)
GBN : GEOBRER4_06240(rimO)
PPOR : JCM14722_15530(rimO)
VIN : AKJ08_0011 AKJ08_3715
BAYD : BSPP4475_09295(rimO)
PCHI : PC41400_21070(rimO)
COHN : KCTCHS21_37630(rimO)
CCOH : SAMEA4530647_1106(rimO)
CGEL : psyc5s11_40840(rimO)
CLO : HMPREF0868_0634(rimO)
RPAY : P0092_10155(rimO) P0092_17210
SMAN : C12CBH8_01480(rimO)
PFAA : MM59RIKEN_10390(rimO)
VFA : MM35RIKEN_19480(rimO)
VCOP : MM50RIKEN_02240(rimO)
BYL : A4V09_07850 A4V09_22270
BPRO : PMF13cell1_03732(rimO)
BLUI : Blut17040_12690(rimO)
CSCI : HDCHBGLK_02881(rimO)
CHYL : CE91St63_14960(rimO)
ACEL : acsn021_26890(rimO)
ACHT : bsdcttw_28650(rimO)
CBAR : PATL70BA_0409(rimO)
AMIC : Ami3637_16485(rimO)
ABUT : Ami103574_08600(rimO)
ETM : CE91St48_18790(rimO)
PDF : CD630DERM_13260(rimO)
PHX : KGNDJEFE_01475(rimO_1)
FAA : HMPREF0389_00051(rimO)
MTHO : MOTHE_c10340(rimO2)
MTHZ : MOTHA_c11230(rimO2)
NCD : ACONDI_01025(rimO_1)
CDIA : CaldiYA01_15190(rimO)
PHAR : NCTC13077_00858(rimO)
PIV : NCTC13079_00811(rimO)
VRM : 44547418_01282(rimO)
VDN : NCTC11831_00676(rimO)
DHO : Dia5BBH33_08150(rimO)
MANA : MAMMFC1_03820(rimO_2)
PFAC : PFJ30894_01675(rimO)
AARG : Aargi30884_29420(rimO)
ABSI : A9CBEGH2_01550(rimO)
PCAT : Pcatena_07700(miaB_2)
RTS : CE91St31_17260(rimO)
RANT : RHODO2019_05175(rimO)
SAMB : SAM23877_5456(rimO)
SLE : sle_19160(sle_19160)
SGM : GCM10017557_21540(rimO)
STUI : GCM10017668_52320(rimO)
SGOB : test1122_21130(rimO)
SXT : KPP03845_105448(rimO)
DCO : SAMEA4475696_1464(rimO)
PAK : HMPREF0675_4065(rimO)
CGRN : 4412665_01201(rimO)
PAUS : NCTC13651_01673(rimO)
PPC : HMPREF9154_1367(rimO)
BROO : brsh051_26170(rimO)
NAQU : ENKNEFLB_02942(rimO)
AGRA : AGRA3207_006439(rimO)
MSAG : GCM10017556_40630(rimO)
ACTR : Asp14428_62870(rimO)
ABAM : B1s21122_04320(rimO)
SYY : SYNGTS_2593(slr0082)
SYT : SYNGTI_2592(slr0082)
SYS : SYNPCCN_2591(slr0082)
SYQ : SYNPCCP_2591(slr0082)
SYNW : SynWH8103_02524(miaB)
LET : O77CONTIG1_02202(rimO_3)
PRUN : PCC7821_01941(rimO)
NSPH : BDGGKGIB_00687(rimO)
DEIN : DAAJ005_13455(rimO)
OBG : Verru16b_02604(rimO)
ABIW : Abiwalacus_01180(rimO)
RCF : Poly24_30770(rimO_2)
LCRE : Pla8534_14500(rimO)
AMUC : Pan181_32680(rimO_1)
SDYN : Mal52_24300(rimO_1)
PPIO : CE91St28_00460(rimO)
BTHO : Btheta7330_02549(rimO)
BCEL : BcellWH2_05340(rimO)
BFC : BacF7301_18095(rimO)
PCRE : NCTC12858_00343(rimO)
PCAG : NCTC12856_00356(rimO)
PSOE : CE91St14_11400(rimO)
COPR : Cop2CBH44_15670(rimO)
CFAS : Cfast33896_10030(rimO)
PMZ : HMPREF0659_A6834(rimO)
PDN : HMPREF9137_1352(rimO)
PHER : prwr041_23740(rimO)
POC : NCTC13071_01750(rimO)
ACOU : A5CBH24_07770(rimO)
ADA : A5CPEGH6_08260(rimO)
SMIZ : 4412673_00040(rimO)
SDJ : NCTC13534_00043(rimO)
STHA : NCTC11429_01529(rimO)
PSEZ : HME7025_00591(rimO)
FOK : KK2020170_14450(rimO)
PHG : KCTC32516_02350(rimO_2)
AALG : AREALGSMS7_04947(rimO)
KOS : KORDIASMS9_02481(rimO)
KAN : IMCC3317_42250(rimO_2)
SPON : HME9304_02538(rimO)
OHM : MSHRCOH1_06120(rimO)
CGLE : NCTC11432_02301(rimO)
CTAI : NCTC12078_00913(rimO)
CTAK : 4412677_01067(rimO)
CHRJ : CHRYMOREF3P_1874(rimO)
CJG : NCTC13459_02743(rimO)
CANT : NCTC13489_01513(rimO)
KFA : Q73A0000_09305(rimO)
PTAN : CRYO30217_02217(rimO)
PROC : Ptc2401_00686(rimO)
» show all
Taxonomy
Reference
Authors
Anton BP, Saleh L, Benner JS, Raleigh EA, Kasif S, Roberts RJ
Title
RimO, a MiaB-like enzyme, methylthiolates the universally conserved Asp88 residue of ribosomal protein S12 in Escherichia coli.
Journal
Sequence
Reference
Authors
Lee KH, Saleh L, Anton BP, Madinger CL, Benner JS, Iwig DF, Roberts RJ, Krebs C, Booker SJ
Title
Characterization of RimO, a new member of the methylthiotransferase subclass of the radical SAM superfamily.
Journal
Sequence
Reference
Authors
Arragain S, Garcia-Serres R, Blondin G, Douki T, Clemancey M, Latour JM, Forouhar F, Neely H, Montelione GT, Hunt JF, Mulliez E, Fontecave M, Atta M
Title
Post-translational modification of ribosomal proteins: structural and functional characterization of RimO from Thermotoga maritima, a radical S-adenosylmethionine methylthiotransferase.
Journal
Sequence
Reference
Authors
Strader MB, Costantino N, Elkins CA, Chen CY, Patel I, Makusky AJ, Choy JS, Court DL, Markey SP, Kowalak JA
Title
A proteomic and transcriptomic approach reveals new insight into beta-methylthiolation of Escherichia coli ribosomal protein S12.
Journal
Sequence
Reference
Authors
Landgraf BJ, Arcinas AJ, Lee KH, Booker SJ
Title
Identification of an intermediate methyl carrier in the radical S-adenosylmethionine methylthiotransferases RimO and MiaB.
Journal
Reference
Authors
Forouhar F, Arragain S, Atta M, Gambarelli S, Mouesca JM, Hussain M, Xiao R, Kieffer-Jaquinod S, Seetharaman J, Acton TB, Montelione GT, Mulliez E, Hunt JF, Fontecave M
Title
Two Fe-S clusters catalyze sulfur insertion by radical-SAM methylthiotransferases.
Journal
Sequence
Other DBs
ExplorEnz - The Enzyme Database: 2.8.4.4
ExPASy - ENZYME nomenclature database: 2.8.4.4
BRENDA, the Enzyme Database: 2.8.4.4