KEGG   ENZYME: 4.1.1.90
Entry
EC 4.1.1.90                 Enzyme                                 
Name
peptidyl-glutamate 4-carboxylase;
vitamin K-dependent carboxylase;
gamma-glutamyl carboxylase;
peptidyl-glutamate 4-carboxylase (2-methyl-3-phytyl-1,4-naphthoquinone-epoxidizing)
Class
Lyases;
Carbon-carbon lyases;
Carboxy-lyases
Sysname
peptidyl-glutamate 4-carboxylase (2-methyl-3-phytyl-1,4-naphthoquinol-epoxidizing)
Reaction(IUBMB)
peptidyl-4-carboxyglutamate + 2,3-epoxyphylloquinone + H2O = peptidyl-glutamate + CO2 + O2 + phylloquinol [RN:R05144]
Reaction(KEGG)
R05144;
(other) R09991
Substrate
peptidyl-4-carboxyglutamate [CPD:C06246];
2,3-epoxyphylloquinone [CPD:C05849];
H2O [CPD:C00001]
Product
peptidyl-glutamate [CPD:C06247];
CO2 [CPD:C00011];
O2 [CPD:C00007];
phylloquinol [CPD:C03313]
Comment
The enzyme can use various vitamin-K derivatives, including menaquinol, but does not contain iron. The mechanism appears to involve the generation of a strong base by oxygenation of vitamin K. It catalyses the post-translational carboxylation of glutamate residues of several proteins of the blood-clotting system. 9--12 glutamate residues are converted to 4-carboxyglutamate (Gla) in a specific domain of the target protein. The 4-pro-S hydrogen of the glutamate residue is removed [5] and there is an inversion of stereochemistry at this position [6].
History
EC 4.1.1.90 created 2009, modified 2011
Pathway
ec00130  Ubiquinone and other terpenoid-quinone biosynthesis
ec01100  Metabolic pathways
ec01110  Biosynthesis of secondary metabolites
Orthology
K10106  vitamin K-dependent gamma-carboxylase
Genes
HSA2677(GGCX)
PTR459364(GGCX)
PPS100979139(GGCX)
GGO101133597(GGCX)
PON100171564(GGCX)
NLE100605566(GGCX)
HMH116484114(GGCX)
MCC695628(GGCX)
MCF102116153(GGCX)
MTHB126933385
MNI105465382(GGCX)
CSAB103219944(GGCX)
CATY105587647(GGCX)
PANU101020748(GGCX)
TGE112636902(GGCX)
MLEU105528850(GGCX)
RRO104677047(GGCX)
RBB108518115(GGCX)
TFN117062132(GGCX)
PTEH111551132(GGCX)
CANG105527602(GGCX)
CJC100412061(GGCX)
SBQ101035344(GGCX)
CIMI108295705(GGCX)
CSYR103250138(GGCX)
MMUR105876590(GGCX)
LCAT123637123(GGCX)
PCOQ105810269(GGCX)
OGA100953290(GGCX)
MMU56316(Ggcx)
MCAL110295983(Ggcx)
MPAH110315938(Ggcx)
RNO81716(Ggcx)
MCOC116099081(Ggcx)
ANU117714830(Ggcx)
MUN110558893(Ggcx)
CGE100774482(Ggcx)
MAUA101823033(Ggcx)
PROB127235720(Ggcx)
PLEU114681594(Ggcx)
MORG121441057(Ggcx)
MFOT126495260
AAMP119806379(Ggcx)
NGI103739792(Ggcx)
HGL101703456(Ggcx)
CPOC100730272(Ggcx)
CCAN109686177(Ggcx)
DORD106000221(Ggcx)
DSP122116883(Ggcx)
PLOP125356225(Ggcx)
NCAR124963392
MMMA107159715(Ggcx)
OCU100346091
OPI101522968(GGCX)
TUP102479702(GGCX)
GVR103594511(GGCX)
CFA475769(GGCX)
CLUD112664313(GGCX)
VVP112916676(GGCX)
VLG121491115(GGCX)
NPO129510836(GGCX)
AML100477985(GGCX)
UMR103671848(GGCX)
UAH113243151(GGCX)
UAR123799658(GGCX)
ELK111147897 111148155
LLV125110018
MPUF101674852(GGCX)
MNP132021398(GGCX)
MLK131840388(GGCX)
NVS122915050(GGCX)
ORO101380661(GGCX)
EJU114203728 114203729
ZCA113937957(GGCX)
MLX118007911(GGCX)
NSU110587403(GGCX)
LWW102747287(GGCX)
FCA101085622(GGCX)
PYU121019159(GGCX)
PCOO112868883(GGCX)
PBG122497107(GGCX)
PVIV125161931(GGCX)
LRUF124503019
PTG102962433(GGCX)
PPAD109263806(GGCX)
PUC125937401
AJU106978202
HHV120220500(GGCX)
BTA281190(GGCX)
BOM102277857(GGCX)
BIU109566174(GGCX)
BBUB102393009(GGCX)
BBIS105004558(GGCX)
CHX102170242(GGCX)
OAS443129(GGCX)
BTAX128055800(GGCX)
ODA120851488(GGCX)
CCAD122441738(GGCX)
MBEZ129539212(GGCX)
SSC100620337(GGCX)
CFR102506387(GGCX)
CBAI105072101(GGCX)
CDK105104153(GGCX)
VPC102543119(GGCX)
BACU103007146(GGCX)
BMUS118905678(GGCX)
LVE103089680(GGCX)
OOR101285440(GGCX)
DLE111165448(GGCX)
PCAD102985096(GGCX)
PSIU116764387(GGCX)
NASI112398960(GGCX)
ECB100067312(GGCX)
EPZ103548273(GGCX)
EAI106838601(GGCX)
MYB102242720(GGCX)
MYD102767774(GGCX)
MMYO118668788(GGCX)
MLF102429671(GGCX)
PKL118717610(GGCX)
EFUS103299046(GGCX)
MNA107528662(GGCX)
DRO112302990(GGCX)
SHON118982322(GGCX)
AJM119059873(GGCX)
PDIC114499213(GGCX)
PHAS123811894(GGCX)
MMF118630499(GGCX)
PPAM129073956(GGCX)
HAI109371334(GGCX)
RFQ117032921(GGCX)
PALE102898204(GGCX)
PGIG120594588(GGCX)
PVP105298516(GGCX)
RAY107506180(GGCX)
MJV108405890(GGCX)
TOD119259131(GGCX)
SARA101551669(GGCX)
LAV100675417(GGCX)
TMU101340769
ETF101638327(GGCX)
DNM101415430(GGCX)
MDO100030057(GGCX)
GAS123236676(GGCX)
SHR116421248(GGCX)
AFZ127547440
PCW110196278(GGCX)
OAA100077833(GGCX)
PCOC116231292(GGCX)
MGP104916860
CJO107323599(GGCX)
LMUT125685279(GGCX)
NMEL110387173(GGCX)
APLA119713508(GGCX)
CATA118259321(GGCX)
AFUL116499300(GGCX)
TGU100221126(GGCX)
LSR110478265(GGCX)
PMOA120504920(GGCX)
OTC121346663(GGCX)
PRUF121359598(GGCX)
FAB101818545(GGCX)
OMA130261855(GGCX)
PHI102110670(GGCX)
PMAJ107213872(GGCX)
CCAE111944157(GGCX)
CCW104683151(GGCX)
CBRC103622636(GGCX)
SVG106862388(GGCX)
HRT120763962(GGCX)
TALA116963810(GGCX)
ACHC115349897(GGCX)
AGEN126051622
SHAB115602933(GGCX)
RTD128900144(GGCX)
AAM106493802(GGCX)
AROW112961654(GGCX)
DNE112995819(GGCX)
SCAM104148909(GGCX)
ASN102383382(GGCX)
AMJ106737680
CPOO109317369(GGCX)
GGN109295521(GGCX)
PSS102449866(GGCX)
CMY102930896(GGCX)
CCAY125626506(GGCX)
DCC119848794(GGCX)
CPIC101940387(GGCX)
TST117872830(GGCX)
CABI116830718(GGCX)
MRV120398325(GGCX)
ACS100555036(ggcx)
ASAO132782304(GGCX)
PVT110072205(GGCX)
SUND121933178(GGCX)
PBI103064362(GGCX)
PMUR107283246(GGCX)
CTIG120299414 120320110
TSR106550210(GGCX)
PGUT117673367(GGCX)
APRI131203635(GGCX)
PTEX113445859(GGCX)
NSS113423356(GGCX)
VKO123016752(GGCX)
PMUA114602665(GGCX)
PRAF128420033(GGCX)
ZVI118086699(GGCX)
HCG128333841(GGCX)
GJA107120342(GGCX)
STOW125441520(GGCX)
EMC129342338(GGCX)
XLA444473(ggcx.L)
XTR100144666(ggcx)
NPR108786501(GGCX)
RTEM120933026(GGCX)
BBUF120986144(GGCX)
BGAR122927405(GGCX)
MUO115469238(GGCX)
GSH117362366(GGCX)
DRE557240(ggcx)
SRX107713363 107744113
SANH107686456 107688460
SGH107562573 107569403
CCAR109052005 109052006
CAUA113054121(ggcx)
CGIB128021367
PTET122352884(ggcx)
LROH127171708(ggcx)
OMC131548403(ggcx)
PPRM120481998(ggcx)
RKG130087107(ggcx)
MAMB125256553(ggcx)
CIDE127520621
MASI127432741
TROS130545668(ggcx)
TDW130411670(ggcx)
MANU129447196(ggcx)
IPU108276729
IFU128620095(ggcx)
PHYP113544161(ggcx)
SMEO124393922(ggcx)
TFD113661292(ggcx)
TVC132863129(ggcx)
AMEX103037933(ggcx)
CMAO118824259(ggcx)
EEE113575128(ggcx)
CHAR105895502(ggcx)
TRU101067681(ggcx)
TFS130516896(ggcx)
TNGGSTEN00017326G001
LCO104923320(ggcx)
NCC104944448(ggcx)
TBEN117476452(ggcx)
CGOB115016566(ggcx)
PGEO117456244(ggcx)
GACU117558143(ggcx)
EMAC134868377(ggcx)
ELY117269650(ggcx)
EFO125905640(ggcx)
PLEP121959554(ggcx)
SLUC116035102(ggcx)
ECRA117959301(ggcx)
PFLV114571490(ggcx)
GAT120832229(ggcx)
PPUG119226506(ggcx)
AFB129102407(ggcx)
CLUM117740251(ggcx)
PSWI130205319(ggcx)
MSAM119914441(ggcx)
SCHU122866046(ggcx)
CUD121524933(ggcx)
ALAT119030073(ggcx)
MZE101484617(ggcx)
ONL100703429(ggcx)
OAU116322404(ggcx)
OLA101172424(ggcx)
OML112163202(ggcx)
CSAI133455290(ggcx)
XMA102224466(ggcx)
XCO114149555(ggcx)
XHE116724289(ggcx)
PRET103473687(ggcx)
PFOR103148465(ggcx)
PLAI106942210(ggcx)
PMEI106927956(ggcx)
GAF122846891(ggcx)
PPRL129366516(ggcx)
CVG107092698(ggcx)
CTUL119771594(ggcx)
GMU124872326(ggcx)
NFU107372879(ggcx)
KMR108232694(ggcx)
ALIM106514510(ggcx)
NWH119425080(ggcx)
AOCE111568361(ggcx)
MCEP124996587(ggcX)
CSEM103390489(ggcx)
POV109626324(ggcx)
SSEN122781970(ggcx)
HHIP117772029(ggcx)
HSP118125659(ggcx)
SMAU118284516(ggcx)
LCF108879865
SDU111234176(ggcx)
SLAL111668085(ggcx)
XGL120806113(ggcx)
HCQ109513153(ggcx)
SSCV125980049
SBIA133490654(ggcx)
PEE133413348(ggcx)
PTAO133490262(ggcx)
BPEC110160481(ggcx)
MALB109963473(ggcx)
BSPL114866779(ggcx)
SJO128380723(ggcx)
SASA106563193
STRU115204185(ggcx)
OTW112231088(ggcx)
OMY110509897
OGO124007218(ggcx)
ONE115101259
OKI109873963(ggcx)
OKE118385197
SALP111964110(ggcx)
SNH120021309(ggcx)
CCLU121541763(ggcx)
ELS105014991(ggcx)
SFM108931977(ggcx)
PKI111849976(ggcx)
AANG118213230(ggcx)
LOC102682147(ggcx)
PSPA121303076(ggcx)
ARUT117397839(ggcx) 117969799
PSEX120539376(ggcx)
LCM102360484(GGCX)
CMK103187831(ggcx)
HOC132836951(ggcx)
LERI129713416(ggcx)
PMRN116956866(GGCX)
BFO118417156 118425987
BBEL109465908 109473717
CIN780874(ggcx)
SCLV120347316
SPU764318
LPIC129274173 129274183
APLC110974161
AJC117109834
SKO102801874
DMEDmel_CG13927(GC)
DER6545421
DSE6610356
DSIDsimw501_GD13462(Dsim_GD13462)
DYADyak_GE20943
DAN6506657
DSR110190904
DPO4812497
DPE6600635
DMN108151764
DWI6646452
DGR6557678
DMODmoj_GI12843
DAZ108614065
DNV108652044
DHE111602887
DVI6624515
CCAT101448340
BOD106619240
BDR105223278
RZE108361437
AOQ129240713
TDA119679660 119679680
MDE101889022
SCAC106092440
LCQ111686371
LSQ119604676
GFS119631398
ECOE129946951
CLON129610213
AGA1276973
ACOZ120952145
AARA120895591
AMER121592795
ASTE118509529
AFUN125772046
AMOU128305503
AALI118467472
AAG110675715 5575300
AALB109426646
CQUCpipJ_CPIJ007343
CPII120430322 120430752
BCOO119080695
AME551869
ACER108003849
ALAB122720871
ADR102671312
AFLR100872387
BIM100749841
BBIF117208219
BVK117236017
BVAN117159183
BTER100645769
BAFF126921462
BPYO122573975
BPAS132904825
FVI122535665
OBB114875533
OLG117605688
MGEN117225787
NMEA116430835
CGIG122395747
SOC105204060
MPHA105840699
AEC105149615
ACEP105624485
PBAR105421986
VEM105568543
HST105191645
DQU106746013
CFO105250361
FEX115239838
LHU105675652
PGC109860098
OBO105281857
PCF106787857
PFUC122516511
VPS122628445
VCRB124424691
VVE124948570
NVI100123716
CSOL105369056
TPRE106650633
MDL103571031
CGLO123272631
FAS105266142
DAM107048203
AGIF122853184
VCAN122411035
CCIN107270980
AROA105689579
TCA659418
SOY115883290 115888516
ATD109594009
CSET123310822
AGB108907226
LDC111512065
NVL108568265
PPYR116171578
OTU111419541
MSEX115452079 115455214
DPLKGM_210061
BANY112047340
MJU123866703
NIQ126768418
VCD124530424
MCIX123654482
PMAC106710934
PPOT106102403
PXU106125099
PRAP110993504
PBX123714439
PNAP125060538
ZCE119831341
CCRC123692608
LSIN126973045
HAW110374548
HZE124630617
TNL113502696
SLIU111349422
OFU114358170
PXY105388304
PGW126366979
CFEL113375535
CCRN123293319
API100161672
DNX107166675
AGS114126066
RMD113548907
ACOO126840504
DVT126904144
CLEC106669169
HHAL106691853
NLU111051519
HVI124358251
MQU128986236
PHUPhum_PHUM216730
FOC113201688
TPAL117653491
ZNE110828681
CSEC111871355
SGRE126320553
BROR134529100
IEL124160705
FCD110841759
DPXDAPPUDRAFT_301381
DMK116932807
DPZ124349512
PVM113801056
PJA122255838
PCHN125042198
PMOO119582084
HAME121859758
PCLA123759075
CQD128689290
PTRU123519942
ESN126981087
DSV119438165
RSAN119379132
RMP119162117
TUT107364188
DPTE113793855
DFR124489784
CSCU111628100
PTEP107438863
ABRU129967621
UDV129216381
SDM118182381
LPOL106461636
PMEO129597747
LGILOTGIDRAFT_182855
PVUL126812398
PCAN112576487
BGT106056263
GAE121392496
HRF124131351
HRJ124278444 124281086
CRG105332560
CVN111122173
CANU128165241
OED125671143
MYI110441576 110455778 110455786 110467012
PMAX117318519 117339305
MCAF127709123
MMER123562038
RPHI132713256
DPOL127866477
OBI106881997
OSN115214216
LAK106156062 106176385
NVE5510609 5513238
EPA110234296 110252598
ATEN116302643 116307421
ADF107336790
AMIL114961251
PDAM113669402
SPIS111343419
DGT114527632 114540605
XEN124453722
HMG101241467
HSY130640948
TADTRIADDRAFT_24664 TRIADDRAFT_30063 TRIADDRAFT_30165
ACANACA1_144060
GAIIMCC3135_16340
MSDMYSTI_05511
MFBMFUL124B02_30040
CFUSCYFUS_007648
SCLsce5891 sce9136
CCROCMC5_035660(hsdR) CMC5_063260(hsdR)
PSLPsta_4704
RULUC8_52280
BVOPan97_29110
AMUCPan181_23390
PLSVT03_27170
FMRFuma_05241 Fuma_05242
SDYNMal52_09050 Mal52_31760
RHOZGXP67_23550
FLIFleli_0657
RTIDC20_08405
ADDHUW48_25145
ASWUHUW51_07865
FBTD770_15920
GFLGRFL_1667
ZPRZPR_0452
CATCA2559_04035
FBCFB2170_04190
MARMYQ22_10150
MARTBTR34_10190
MARBCJ263_05790
MAREEJ994_11355
CAOCelal_1898
CLYCelly_1768
CLHIX49_08705
CBALM667_06850
KDIKrodi_0994
DOKMED134_08386
DDOI597_0466
DODDCS32_07030
LANLacal_0765
LVNBWR22_02390
LACICW733_11330
ZGAZOBELLIA_2135(ggcX)
AEVEI546_12220
PTQP700755_001523
NDODDD_0997
NOMAAT17_05750
NSDBST91_00125
NOBCW736_05925
NOJEJ995_04355
MYRMYRA21_1416
MPWMPR_0249
MODAS202_06700
MYZBK054_06570
WINWPG_1078
WIJBWZ20_08030
SYISB49_10350
FOPFNB79_04915
SEONBWZ22_05960
OLLCW732_05055
OAQDZC78_11875
AUEC5O00_04095
KOSKORDIASMS9_01603
KANIMCC3317_34070
AQBD1818_12520
AQAD1815_18495
AQDD1816_14060
PSYNE9099_05175
AFLAFHG64_08135
MESQC7H62_1343
GAAHX109_07995
CAGGHYG79_05565
ALTIALE3EI_1122
MRSMurru_1668
MUTGVT53_19070
SPONHME9304_01912(ggcX)
ORHOrnrh_0596
ORIQ785_06760
EFALFH779_03060
ESTEHNV03_01385
NLIG3M70_11240
 » show all
Reference
1  [PMID:7569894]
  Authors
Dowd P, Hershline R, Ham SW, Naganathan S
  Title
Vitamin K and energy transduction: a base strength amplification mechanism.
  Journal
Science 269:1684-91 (1995)
DOI:10.1126/science.7569894
Reference
2  [PMID:10068650]
  Authors
Furie B, Bouchard BA, Furie BC
  Title
Vitamin K-dependent biosynthesis of gamma-carboxyglutamic acid.
  Journal
Blood 93:1798-808 (1999)
Reference
3  [PMID:17073445]
  Authors
Rishavy MA, Hallgren KW, Yakubenko AV, Shtofman RL, Runge KW, Berkner KL
  Title
Bronsted analysis reveals Lys218 as the carboxylase active site base that deprotonates vitamin K hydroquinone to initiate vitamin K-dependent protein carboxylation.
  Journal
Biochemistry 45:13239-48 (2006)
DOI:10.1021/bi0609523
  Sequence
[hsa:2677]
Reference
4  [PMID:17935315]
  Authors
Silva PJ, Ramos MJ
  Title
Reaction mechanism of the vitamin K-dependent glutamate carboxylase: a computational study.
  Journal
J Phys Chem B 111:12883-7 (2007)
DOI:10.1021/jp0738208
Reference
5  [PMID:6150930]
  Authors
Decottignies-Le Marechal P, Ducrocq C, Marquet A, Azerad R
  Title
The stereochemistry of hydrogen abstraction in vitamin K-dependent carboxylation.
  Journal
J Biol Chem 259:15010-2 (1984)
Reference
6  [PMID:1931973]
  Authors
Dubois J, Dugave C, Foures C, Kaminsky M, Tabet JC, Bory S, Gaudry M, Marquet A
  Title
Vitamin K dependent carboxylation: determination of the stereochemical course using 4-fluoroglutamyl-containing substrate.
  Journal
Biochemistry 30:10506-12 (1991)
DOI:10.1021/bi00107a020
Reference
7  [PMID:22516721]
  Authors
Rishavy MA, Berkner KL
  Title
Vitamin K oxygenation, glutamate carboxylation, and processivity: defining the three critical facets of catalysis by the vitamin K-dependent carboxylase.
  Journal
Adv Nutr 3:135-48 (2012)
DOI:10.3945/an.111.001719
Other DBs
ExplorEnz - The Enzyme Database: 4.1.1.90
IUBMB Enzyme Nomenclature: 4.1.1.90
ExPASy - ENZYME nomenclature database: 4.1.1.90
BRENDA, the Enzyme Database: 4.1.1.90

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