KEGG   ENZYME: 6.2.2.1
Entry
EC 6.2.2.1                  Enzyme                                 
Name
thioglycine synthase;
ycaO (gene name) (ambiguous)
Class
Ligases;
Forming carbon-sulfur bonds;
Amide---thiol ligases
Sysname
[methyl-coenzyme M reductase]-glycine---sulfur ligase (thioglycine-forming)
Reaction(IUBMB)
ATP + sulfide + a [methyl-coenzyme M reductase]-glycine = ADP + phosphate + a [methyl-coenzyme M reductase]-thioglycine
Substrate
ATP [CPD:C00002];
sulfide [CPD:C00283];
[methyl-coenzyme M reductase]-glycine
Product
ADP [CPD:C00008];
phosphate [CPD:C00009];
[methyl-coenzyme M reductase]-thioglycine
Comment
Requires Mg2+. The enzyme is found in anaerobic methanogenic and methanotrophic archaea, where it modifies a glycine residue in EC 2.8.4.1, coenzyme-B sulfoethylthiotransferase (methyl-CoM reductase). Upon binding to its substrate, an external source of sulfide attacks the target amide bond generating a tetrahedral intermediate. The amide oxyanion attacks the gamma-phosphate of ATP, releasing ADP and forming a phosphorylated thiolate intermediate that collapses to form thioglycine and phosphate. In most organisms activity requires a second protein (TfuA) , which may allosterically activate this enzyme or assist in the delivery of sulfide to the substrate.
History
EC 6.2.2.1 created 2020
Orthology
K24409  thioglycine synthase
Genes
PFUWKF707C_3290
TWGThiowin_01461
EGIPZN02_005413
SKMPZL22_005453
RIIFFM53_031610
STARG3545_06705
JAVOXU80_22100
LIZLGH83_15860
LCKHN018_08740
AOZHUE56_13285
SKTIGS68_04565
SMUCJL100_004740
SROEJL101_004470
DLIdnl_33670
MFBMFUL124B02_11525 MFUL124B02_15270
AVMJQX13_45925
LANIFAX13_08725
LMURCPS94_08685
NWLNWFMUON74_59280
SCADDN051_43975 DN051_44415
STSUB7R87_19585
SCHACP983_14340
SHKJ2N69_02335
SINNABB07_39350
PNVJMY29_01365
NANOG5V58_02385
SPIQOHA34_21280
NAKAH7F38_14235
PBROHOP40_00680
ACTYOG774_13395
AOUACTOB_008623
ATLAthai_48110
PRYPrubr_27290
PCORKS4_05530
SCORJ3U87_08480
HVLMUN86_29095
AQENBT05_09800
MJAMJ_1094
MFEMefer_1337
MVUMetvu_1441
MFSMFS40622_0163
MIFMetin_1421
MJHJH146_0034
MESGMLAUSG7_0808
MESAMLASG1_0385
MIGMetig_0726
MMPMMP1056
MMQMmarC5_0537
MMXMmarC6_1602
MMZMmarC7_0310
MMDGYY_06120
MMAKMMKA1_12210
MMAOMMOS7_11510
MMADMMJJ_17940
MAEMaeo_0842
MVNMevan_0379
MVOMvol_0253
MOKMetok_0448
METFCFE53_02015
MTHMTH_987
MMGMTBMA_c13710
MWOMWSIV6_1375
MTEEMTTB_04340
METCMTCT_0897
METEtca_00950
METZMETMT2_1016
METKFVF72_06665
MTHMFZP57_06565
METJFZP68_04095
MSTMsp_1155
METBAW729_10000
MEISPXD04_01890
MRUmru_0668
MSIMsm_0480
MEBAbm4_0398
MMILsm9_0538
MEYETL18_02440
MOLYLM1_0309
MAROMarbSA_17470
METVK4897_02910
MELMetbo_0407
MEWMSWAN_1943
METHMBMB1_1575
MFCBRM9_0810
MFIDSM1535_0773
MCUBMCBB_1870
MSUBBK009_06870
METNBK008_02510
METTCIT01_02675
METOCIT02_10075
MEMEHYG87_04015
MFEGGCM10025860_01130
MFVMfer_0482
MKAMK0115
MBAMbar_A0821
MBYMSBRM_0176
MBWMSBRW_0180
MBARMSBR2_2206
MBAKMSBR3_2262
MACMA_0165
MMAMM_1458
MMAZMmTuc01_1512
MMJMSMAS_3208
MMACMSMAC_3228
MVCMSVAZ_3345
MEKMSKOL_3304
MLSMSLAZ_3089
METMMSMTP_3106
MEFMSWH1_3058
MEQMSWHS_3267
MSJMSSAC_0148
MSZMSSIH_0135
MSWMSSIT_0139
MTHRMSTHT_1941
MTHEMSTHC_1342
MHORMSHOH_3957
MFZAOB57_009015
MBUMbur_2069
MMETMCMEM_0269
MELOJ7W08_11435
MMHMmah_0267
MHAZBHR79_02185
MPOTBKM01_06200
MEVMetev_2080
MZHMzhil_1516
MPYMpsy_2233
MZIHWN40_10930
MMAVRE476_12170
MSEBRE474_09070
MHZMetho_2173
MEHFMmiHf6_01450
MEESMmiEs2_08590
MTPMthe_1401
MCJMCON_2772
MHIMhar_1259
MHUMhun_0527
MRTJKHC33_11485
MLAMlab_0591
MEMMemar_1333
MBGBN140_2159
MEMAMMAB1_2861
MCHKMchiMG62_15170 MchiMG62_25560
MSUMOH143_00895 OH143_05470
MRCR6Y96_03715 R6Y96_05710
MPIMpet_0085
MENDL6E24_07630 L6E24_08460
MEFWF1737_00080 F1737_10570
MAQERJ40_07070
MFKE2N92_07225
MOUOU421_01545
MESBL1S32_05055 L1S32_11065
MANQL1994_00495 L1994_10560
MBNMboo_1978
MFOMetfor_0708
MPLMpal_1211
MPDMCP_0554
MEZMtc_0967
RCIRCIX2079
MELUMTLP_09620
MEAMMU439_01350
MEAEQEN48_01020
TARTALC_00474
MAXMMALV_04020
MERMMINT_15690
MEARMpt1_c06130
MEUZKRP56_02100
MARCAR505_1405
NGANgar_c02500
NVNNVIE_013960
NEVNTE_02802
TAANMY3_01438
NFNNFRAN_2335
NCVNCAV_1569
 » show all
Reference
1  [PMID:28880150]
  Authors
Nayak DD, Mahanta N, Mitchell DA, Metcalf WW.
  Title
Post-translational thioamidation of methyl-coenzyme M reductase, a key enzyme in  methanogenic and methanotrophic Archaea.
  Journal
Elife 6:e29218 (2017)
DOI:10.7554/eLife.29218
  Sequence
Reference
2  [PMID:29507203]
  Authors
Mahanta N, Liu A, Dong S, Nair SK, Mitchell DA
  Title
Enzymatic reconstitution of ribosomal peptide backbone thioamidation.
  Journal
Proc Natl Acad Sci U S A 115:3030-3035 (2018)
DOI:10.1073/pnas.1722324115
  Sequence
[mac:MA_0165 MA_0164] [mka:MK0115]
Reference
3  [PMID:31139720]
  Authors
Dong SH, Liu A, Mahanta N, Mitchell DA, Nair SK
  Title
Mechanistic Basis for Ribosomal Peptide Backbone Modifications.
  Journal
ACS Cent Sci 5:842-851 (2019)
DOI:10.1021/acscentsci.9b00124
  Sequence
[mja:MJ_1094]
Other DBs
ExplorEnz - The Enzyme Database: 6.2.2.1
IUBMB Enzyme Nomenclature: 6.2.2.1
ExPASy - ENZYME nomenclature database: 6.2.2.1
BRENDA, the Enzyme Database: 6.2.2.1

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