KEGG   Escherichia coli K-12 MG1655: b1099
Entry
b1099             CDS       T00007                                 
Symbol
holB
Name
(RefSeq) DNA polymerase III subunit delta'
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
eco  Escherichia coli K-12 MG1655
Pathway
eco03030  DNA replication
eco03430  Mismatch repair
eco03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:eco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    b1099 (holB)
   03430 Mismatch repair
    b1099 (holB)
   03440 Homologous recombination
    b1099 (holB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:eco03032]
    b1099 (holB)
   03400 DNA repair and recombination proteins [BR:eco03400]
    b1099 (holB)
Enzymes [BR:eco01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     b1099 (holB)
DNA replication proteins [BR:eco03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     b1099 (holB)
DNA repair and recombination proteins [BR:eco03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     b1099 (holB)
SSDB
Motif
Pfam: DNApol3-delta_C DNA_pol3_delta2 HolB_lid EPF
Other DBs
NCBI-GeneID: 945661
NCBI-ProteinID: NP_415617
Pasteur: holB
RegulonDB: ECK120001456
ECOCYC: EG11500
ASAP: ABE-0003716
UniProt: P28631
Structure
Position
1155762..1156766
AA seq 334 aa
MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCG
HCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL
TDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV
TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQ
APARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQL
MSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgagatggtatccatggttacgacctgatttcgaaaaactggtagccagctatcaggcc
ggaagaggtcaccatgcgctactcattcaggcgttaccgggcatgggcgatgatgcttta
atctacgccctgagccgttatttactctgccaacaaccgcagggccacaaaagttgcggt
cactgtcgtggatgtcagttgatgcaggctggcacgcatcccgattactacaccctggct
cccgaaaaaggaaaaaatacgctgggcgttgatgcggtacgtgaggtcaccgaaaagctg
aatgagcacgcacgcttaggtggtgcgaaagtcgtttgggtaaccgatgctgccttacta
accgacgccgcggctaacgcattgctgaaaacgcttgaagagccaccagcagaaacttgg
tttttcctggctacccgcgagcctgaacgtttactggcaacattacgtagtcgttgtcgg
ttacattaccttgcgccgccgccggaacagtacgccgtgacctggctttcacgcgaagtg
acaatgtcacaggatgcattacttgccgcattgcgcttaagcgccggttcgcctggcgcg
gcactggcgttgtttcagggagataactggcaggctcgtgaaacattgtgtcaggcgttg
gcatatagcgtgccatcgggcgactggtattcgctgctagcggcccttaatcatgaacaa
gctccggcgcgtttacactggctggcaacgttgctgatggatgcgctaaaacgccatcat
ggtgctgcgcaggtgaccaatgttgatgtgccgggcctggtcgccgaactggcaaaccat
ctttctccctcgcgcctgcaggctatactgggggatgtttgccacattcgtgaacagtta
atgtctgttacaggcatcaaccgcgagcttctcatcaccgatcttttactgcgtattgag
cattacctgcaaccgggcgttgtgctaccggttcctcatctttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   ASAP (1)   
   ECOCYC (1)   
   OC (1)   
   PASTEUR (1)   
   REGULONDB (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
3D Structure (8)   
   PDB (8)   
Protein domain (4)   
   Pfam (4)   
All databases (39)   

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