KEGG   ENZYME: 2.1.1.202
Entry
EC 2.1.1.202                Enzyme                                 
Name
multisite-specific tRNA:(cytosine-C5)-methyltransferase;
multisite-specific tRNA:m5C-methyltransferase;
TRM4 (gene name, gene corresponding to ORF YBL024w)
Class
Transferases;
Transferring one-carbon groups;
Methyltransferases
Sysname
S-adenosyl-L-methionine:tRNA (cytosine-C5)-methyltransferase
Reaction(IUBMB)
(1) S-adenosyl-L-methionine + cytosine34 in tRNA precursor = S-adenosyl-L-homocysteine + 5-methylcytosine34 in tRNA precursor [RN:R00595];
(2) S-adenosyl-L-methionine + cytosine40 in tRNA precursor = S-adenosyl-L-homocysteine + 5-methylcytosine40 in tRNA precursor;
(3) S-adenosyl-L-methionine + cytosine48 in tRNA = S-adenosyl-L-homocysteine + 5-methylcytosine48 in tRNA;
(4) S-adenosyl-L-methionine + cytosine49 in tRNA = S-adenosyl-L-homocysteine + 5-methylcytosine49 in tRNA
Reaction(KEGG)
R00595
Substrate
S-adenosyl-L-methionine [CPD:C00019];
cytosine34 in tRNA precursor;
cytosine40 in tRNA precursor;
cytosine48 in tRNA;
cytosine49 in tRNA
Product
S-adenosyl-L-homocysteine [CPD:C00021];
5-methylcytosine34 in tRNA precursor;
5-methylcytosine40 in tRNA precursor;
5-methylcytosine48 in tRNA;
5-methylcytosine49 in tRNA
Comment
The enzyme from Saccharomyces cerevisiae is responsible for complete 5-methylcytosine methylations of yeast tRNA. The incidence of modification depends on the cytosine position in tRNA. At positions 34 and 40, 5-methylcytosine is found only in two yeast tRNAs (tRNALeu(CUA) and tRNAPhe(GAA), respectively), whereas most other elongator yeast tRNAs bear either 5-methylcytosine48 or 5-methylcytosine49, but never both in the same tRNA molecule [1]. The formation of 5-methylcytosine34 and 5-methylcytosine40 is a strictly intron-dependent process, whereas the formation of 5-methylcytosine48 and 5-methylcytosine49 is an intron-independent process [2,3].
History
EC 2.1.1.202 created 1976 as EC 2.1.1.29, part transferred 2011 to EC 2.1.1.202
Orthology
K15334  multisite-specific tRNA:(cytosine-C5)-methyltransferase
Genes
LSM121130158
ATHAT2G22400 AT4G40000
ALY9302975 9316509
CRB17880038 17888772
CSAT104702776 104713682 104720928 104751878
EUSEUTSA_v10000050mg EUTSA_v10024482mg
BRP103837897 103854554 103864345
BNA106363702 106406275 106415936 106439372 106446409 111215813
BOE106292165 106312686 106342432
RSZ108813377 108839838 108855463
THJ104807678
CPAP110814304
CIT102621904
CICCICLE_v10024895mg
PVY116119486
MINC123210171
TCC18611524
GRA105787805
GHI107950435 107951730
GAB108467056
HSYR120122418 120195582
DZI111291693
EGR104415765 104418316
GMX100808598 100808859
GSJ114382634 114413089 114421850
PVUPHAVU_001G253400g PHAVU_002G261300g
VRA106756522 106768123
VAR108329541 108342131
VUN114177680 114184678
VUM124825441 124825443 124828169
CCAJ109798068 109813507
APRC113849527 113873888
MTR11422681 25501876
TPRA123906248 123908167 123917005
CAM101488656 101488989
PSAT127082943 127096483 127107671
VVO131603250 131661462 131661472
LJALj0g3v0259609.1(Lj0g3v0259609.1) Lj6g3v0550640.1(Lj6g3v0550640.1) Lj6g3v0550640.2(Lj6g3v0550640.2) Lj6g3v0550640.3(Lj6g3v0550640.3)
ADU107481819
AIP107631683
AHF112734371 112792192
LANG109343679 109361180 109362630
PCIN129309217 129320546
QSAO6P43_023175 O6P43_030487
FVE101312383
RCN112188467
PPER18772788
PMUM103333881
PAVI110758772
PDUL117633099
MDM103444818 114826987
MSYL126628212
PXB103936336
ZJU107425311
MNT21402707
CSAV115712258
CSV101206452
CMO103484954
BHJ120073410
MCHA111005554
CMAX111478413 111496800
CMOS111453515 111463320
CPEP111781403 111803463
RCU8273526
JCU105641640
HBR110633522 110666662
MESC110628195
POP7490197
PEU105124485
PALZ118043431
JRE109014563
CILL122303650
CAVE132165871 132166529
QSU111994621 112012653
QLO115994386
TWL119990528 119998203
VVI100247473
VRI117918010
SLY101256287 101259902
SPEN107004815 107020788
SOT102590670 102597730
SSTN125845188 125867306
SDUL129880797 129898434
CANN107850803 107870980
LBB132615602 132640530
NTA107766522 107802160 107808849 107822797
NSY104229518 104244701
NTO104095937 104112456
NAU109206988 109225240
INI109167634 109172654
ITR116013441 116020590
SIND105178292
OEU111367543
EGT105965170
SSPL121768532 121772257
SMIL131001458
SHIS125214806
APAN127258243
HAN110868434
ECAD122610056
LSV111901523
CCAV112512371
DCR108204226
CSIN114315520
RVL131302354
AEW130778213
BVG104896018
SOE110791853
CQI110692707 110723427
ATRI130820701
MOF131159581
NNU104604502
MING122065319
TSS122640802 122669376
PSOM113286760 113312090 113343297 113357906
OSA4345871 4347343
DOSAOs08t0484400-01(Os08g0484400) Os09t0471900-01(Os09g0471900)
OBR102699527 102704358
OGL127783320 127784771
BDI100833836 100841242
ATS109733225 109751909
TDC119286785 119294937 119301908 119310338
TAES123086996 123090971 123095993 123104052 123112276 123121800
TUA125509634 125550515
LPER127301950 127323960
LRD124653455 124657109 124685168
SBI8063738 8067041
ZMA100272508 103641349
SITA101758722 101760456
SVS117844881 117860686
PVIR120660973 120678763 120681975 120712694
PHAI112879702 112897214
PDA103707955
EGU105058442
MUS103992235
ZOF121967103 122052297
DCT110094233
PEQ110025636
AOF109832768
MSIN131234303
NCOL116258757
ATR18423173
SMOSELMODRAFT_120643 SELMODRAFT_418525
PPP112292744
CVRCHLNCDRAFT_54732
APROF751_0192
OLUOSTLU_27152 OSTLU_31007 OSTLU_36629
OTAOT_ostta13g01810
BPGBathy17g01520
MISMICPUN_59410
MPPMICPUCDRAFT_45780(JGI:MicpuC2_45780)
SCEYBL024W(NCL1)
SEUBDI49_0157
SPAOSPAR_B00820
AGOAGOS_AFR179C
ERCEcym_2353
KLAKLLA0_F12562g
KMXKLMA_30139(NCL1)
LTHKLTH0H08096g
VPOKpol_1002p109
ZROZYRO0G08998g
CGRCAGL0K01991g
NCSNCAS_0B05640(NCAS0B05640)
NDINDAI_0B01830(NDAI0B01830) NDAI_0B02980(NDAI0B02980)
TPFTPHA_0C02870(TPHA0C02870) TPHA_0H00150(TPHA0H00150)
TBLTBLA_0A08740(TBLA0A08740)
TGBHG536_0D02370
TDLTDEL_0B04390(TDEL0B04390)
KAFKAFR_0B02220(KAFR0B02220)
KNGKNAG_0D02050(KNAG0D02050) KNAG_0G01510(KNAG0G01510)
ZMKHG535_0E03120
PPAPAS_chr4_0445
DHADEHA2F21384g
PICPICST_37206
PGUPGUG_00345
SPAASPAPADRAFT_49297
LELPVL30_002677(NCL1)
CALCAALFM_CR04300WA(CaO19.518)
CTPCTRG_00396
COTCORT_0D05300
CDUCD36_29640
CTENCANTEDRAFT_100033
YLIYALI0E06765g
CLUCLUG_05640
CLUSA9F13_05g03201
CAURCJI96_0004748
SLBAWJ20_2842(NCL1)
PKZC5L36_0E04630
BNNFOA43_002211
BBRXBRETT_004979
OPAHPODL_04347
SLUDSCDLUD_001597
NCRNCU05301
NTENEUTE1DRAFT80343(NEUTE1DRAFT_80343)
SMPSMAC_01688
PANPODANSg6223
PBELQC761_304030(NCL1)
PPSDQC762_304030(NCL1)
PPSPQC763_304030(NCL1)
PPSAQC764_304030(NCL1)
TTTTHITE_2115779
MTMMYCTH_2299308
MGRMGG_13217
PPEIPpBr36_02907
PGRIPgNI_01794
TMNUCRPA7_7915
SSCKSPSK_01433
FGRFGSG_09744
FPUFPSE_02277
FPOAFPOAC1_011893
FVNFVRRES_12959
FVRFVEG_06362
FOXFOXG_08314
NHENECHADRAFT_76439
FFCNCS54_00259700
FKRNCS57_00255100
FMUJ7337_004428
TRETRIREDRAFT_55981
TRRM419DRAFT_135872
MAWMAC_01383
MAJMAA_06410
PCHMVFPPC_05168
AMUSLMH87_006913
PLJVFPFJ_01100
PTKZJDV02_007568(NCL1)
VDAVDAG_00687
CFJCFIO01_11685
CLUPCLUP02_15192
CHIGCH63R_04760
SAPOSAPIO_CDS7162
ELAUCREL1_8820
PFYPFICI_04470
SSLSS1G_03008
BFUBCIN_06g07260(Bcncl1)
MBEMBM_04174
PSCOLY89DRAFT_718717
GLZGLAREA_04093
ANIANIA_00757
AFMAFUA_1G14180
ACTACLA_021230
NFINFIA_011240
AORAO090012000444
ANGAn01g12180
AFVAFLA_002162
ALUCAKAW2_10395S
ACHEACHE_30558A
APUUAPUU_11248S
PCSN7525_010489
PDPPDIP_66890
POUPOX_c03746
TMFEYB26_006127
TRGTRUGW13939_08954
CIMCIMG_03343
CPWCPC735_008600
UREUREG_07171
PBLPAAG_02188
PBNPADG_11157
ABEARB_00062
TVETRV_01308
AJEHCAG_06738
BGHBDBG_03044
PNOSNOG_06412
PTEPTT_10834
BZECOCCADRAFT_35273
BSCCOCSADRAFT_133594
BORCOCMIDRAFT_5709
AALTCC77DRAFT_998680
ARABEKO05_0006015
ZTRMYCGRDRAFT_52269
PFJMYCFIDRAFT_154036
FFUCLAFUR5_11869
CBETCB0940_07840
BCOMBAUCODRAFT_20558
NPAUCRNP2_1607
TMLGSTUM_00006649001
SPOSPAC17D4.04 SPAC23C4.17
SOMSOMG_01788(trm402) SOMG_03864(trm401)
CNECND00130
CNBCNBD6080
CNGCNAG_00874
CGICGB_J2420C
CDEUCNBG_6084
TMSTREMEDRAFT_44583
TASAA1Q1_07962
CCACCcaHIS019_0705920(NCL1)
TVSTRAVEDRAFT_74804
DSQDICSQDRAFT_105532
PCOPHACADRAFT_172372
SHSSTEHIDRAFT_121240
PSQPUNSTDRAFT_143767
FMEFOMMEDRAFT_152652
GTRGLOTRDRAFT_116964
RSXRhiXN_08541
LBCLACBIDRAFT_319126
CCICC1G_10971
MRRMoror_4753
MOREE1B28_002398
SCMSCHCO_02512227(SCHCODRAFT_02512227)
CPUTCONPUDRAFT_168161
SLASERLADRAFT_345585
WSEWALSEDRAFT_34219
WICJ056_003196
UMAUMAG_05126
PFPPFL1_03144
SGRAEX895_004523
MGLMGL_1048
MRTMRET_3107
MSYMMSY001_0811
PTRCPtA15_8A474
PSTRPst134EA_015785
MLRMELLADRAFT_85533
SREPTSG_03137
EIVEIN_183240 EIN_373320
PTMGSPATT00013766001 GSPATT00018463001
TVATVAG_2v0615400
 » show all
Reference
1  [PMID:10445884]
  Authors
Motorin Y, Grosjean H
  Title
Multisite-specific tRNA:m5C-methyltransferase (Trm4) in yeast Saccharomyces cerevisiae: identification of the gene and substrate specificity of the enzyme.
  Journal
RNA 5:1105-18 (1999)
DOI:10.1017/s1355838299982201
  Sequence
[sce:YBL024W]
Reference
2  [PMID:9207014]
  Authors
Jiang HQ, Motorin Y, Jin YX, Grosjean H
  Title
Pleiotropic effects of intron removal on base modification pattern of yeast tRNAPhe: an in vitro study.
  Journal
Nucleic Acids Res 25:2694-701 (1997)
DOI:10.1093/nar/25.14.2694
Reference
3  [PMID:3537724]
  Authors
Strobel MC, Abelson J
  Title
Effect of intron mutations on processing and function of Saccharomyces cerevisiae SUP53 tRNA in vitro and in vivo.
  Journal
Mol Cell Biol 6:2663-73 (1986)
DOI:10.1128/MCB.6.7.2663
Reference
4  [PMID:17475914]
  Authors
Walbott H, Husson C, Auxilien S, Golinelli-Pimpaneau B
  Title
Cysteine of sequence motif VI is essential for nucleophilic catalysis by yeast tRNA m5C methyltransferase.
  Journal
RNA 13:967-73 (2007)
DOI:10.1261/rna.515707
Other DBs
ExplorEnz - The Enzyme Database: 2.1.1.202
IUBMB Enzyme Nomenclature: 2.1.1.202
ExPASy - ENZYME nomenclature database: 2.1.1.202
BRENDA, the Enzyme Database: 2.1.1.202

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