KEGG   Frankia alni: FRAAL4382
Entry
FRAAL4382         CDS       T00384                                 
Name
(GenBank) hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fal  Frankia alni
Pathway
fal03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FRAAL4382
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fal03400]
    FRAAL4382
Enzymes [BR:fal01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FRAAL4382
DNA repair and recombination proteins [BR:fal03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FRAAL4382
SSDB
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Other DBs
NCBI-ProteinID: CAJ63024
RhizoBase: FRAAL4382
UniProt: Q0RHK2
Position
4763378..4765123
AA seq 581 aa
MGSDDAGGDHARGSRLAEYRSRRHSGRTPEPDVSPLADAGDDGGRRTPRSQERPTSPAPP
PPDHTGDDQNGRGDRFVIHEHHARRLHWDVRLERDGVLVSWAVPRGLPTDSRRNHLAVRT
EDHPLAYADFAGTIPKGEYGAGEVSVWDRGRYRLESWSAEKVKVTLLGERVQGRYAFFAT
GRAHGGGTGSDQRSDRGDRNWMVHRMDPRGDTDPGGTDPDGTGQPRRAGRPARTDPARSP
DLPGGTESRDSMDPPGDPERTPMPGRMAPMLAVPAAAPPEGDDWAYEVKWDGVRALAFVD
GGRPRLRSRSGHDVTDVFPELHTLGPAFGATQVILDGEIVAFGPAGTPDFELLSHRVHIA
TPAIARRAAATIPVRYLVFDLLFLDGHSLLAWPYSGRRALLADLADRGRLRISEELVGTG
DEVVAASAAAGLEGVVAKRRSSPYQPGRRSVDWVKVRHVRRQSVLVGGWEPGTGRRADRI
GALLVGVATPAGPRYAGQVGTGFSEATLDRLAALLAPLRRSDPPLRDVPAEVARGAVWVD
PELIAEVEFTSWTTDGRLRHPSFQGLRIDISPADTARMEET
NT seq 1746 nt   +upstreamnt  +downstreamnt
atgggcagtgacgacgccggtggcgaccacgcgcgagggtctcggctggccgagtaccgg
tctcgccggcacagcgggcgcacccccgaaccggacgtgtcacccctcgccgatgcgggc
gacgatggcggccggcgtaccccccgttcgcaggagcgcccgacctcccccgcacccccg
ccgcccgatcacacgggagacgaccagaacggccgcggcgaccggttcgtgatccacgag
caccacgcccgccggctgcactgggatgtccgcctggaacgggacggggtcctggtcagt
tgggcggtgccccgcggattgccgacggattcccgcaggaaccatctggccgtccgcacc
gaggatcatcccctcgcctacgccgacttcgccgggaccatcccgaagggggagtacggc
gccggtgaggtgagtgtctgggaccgtggccgctaccggctggagtcctggtcggcggag
aaggtcaaggtgacgctgctcggcgagcgggtccagggacgttacgcgttcttcgccacc
ggacgcgcccacggcggggggaccggatcggaccagaggtcggaccggggggaccgaaac
tggatggttcaccggatggacccgcggggcgacacggacccaggcggcacggatccagac
ggcacgggccagccacgccgcgcgggccggccggcccgcacagacccggcgcgcagcccg
gacctgccggggggtacggaatcgcgggacagcatggacccgccgggcgaccccgaacgc
acgccgatgccgggccggatggcaccgatgctcgccgttcccgccgccgcaccgccggag
ggggacgactgggcctacgaggtcaagtgggacggggtacgggcactcgccttcgtcgac
ggcggccggcccaggctgcgcagccgctcggggcacgacgtcaccgacgtcttccccgag
ctgcacacgctcggcccggcgttcggcgccacccaggtgatcctcgacggggagatcgtc
gccttcggcccggcgggtacgcccgacttcgagttgctcagccaccgggtacacatcgcg
acgccggccatcgcgcgtcgtgccgcggcgacgattcccgtccggtacctggtgttcgac
ctgctgttcctcgacgggcactcgctcctcgcatggccctactccgggcggcgggcgctg
ctggccgacctcgccgaccgcgggcggctgcgcatctccgaggaactggtcggtacgggc
gacgaggtcgtggcggcgagcgccgccgccggcctggagggggtcgtggccaaacggcgc
agttccccctaccagcccggtcggcggtcggtggactgggtgaaggtgcggcatgtccga
cggcagagtgtgctcgtcggcgggtgggagcccggcaccggtcggcgcgccgaccggata
ggggccctgctcgtcggtgtcgccacgccggccggcccccgctacgccgggcaggtcggc
accggcttcagcgaagcgacgctcgaccggctggccgcgttgctggcgccgttgcgccgc
tcggaccctccgcttcgggatgtccccgccgaggtcgctcgcggcgccgtctgggtggat
cccgagttgatcgccgaggtcgagttcacctcgtggacgacggacggccggctacgtcac
ccgtccttccaagggctgcgcatcgacatctcccccgccgacaccgcccgtatggaggag
acctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (20)   

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