KEGG   Gallus gallus (chicken): 416665
Entry
416665            CDS       T01006                                 
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
  KO
K10484  structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
gga  Gallus gallus (chicken)
Pathway
gga03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    416665 (SLX4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gga04121]
    416665 (SLX4)
   03400 DNA repair and recombination proteins [BR:gga03400]
    416665 (SLX4)
Ubiquitin system [BR:gga04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul3 complex
    Adoptor and target recognizing subunit (BTB)
     416665 (SLX4)
DNA repair and recombination proteins [BR:gga03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     416665 (SLX4)
SSDB
Motif
Pfam: Slx4 BTB zf-C2H2_jaz zf-met Zn-C2H2_12 zf-C2H2_4 zf-C2H2_6
Other DBs
NCBI-GeneID: 416665
NCBI-ProteinID: XP_004945436
CGNC: 5769
Ensembl: ENSGALG00000031841
Position
14:complement(12836126..12870770)
AA seq 1864 aa
MDEQDNDFKELWANLLGKGKKKPGDAEAAKRAQKRSKNTAAKSKLRRGKAAAKSQNHHLF
PAAKQKSLLQDLGPKIQTLGHKEDSDTVACSSGETSEGDGSRSPFPASQLSTTASDCSQG
TLTVNTRSGCSQTTLSFHPATQSGTCSSPTSKIPPFTGSKVRVAELVVERMQQFKRVAPD
QLKHSTDCSLPKSLASGDFAGESQEQNSPESDLHDLPSMQHDGALALALQQETQKESLES
LEDAGLFFCQICQKDLSAMNSTRREQHVNRCLDEMEEAQMSSSSKPAVPECPICGKQFQT
PQSRVSHLKRCAVEMDVPPKMLLQAVQMQVSTLGEAPLQFPNNQPSRSKRKVSTKEDSKN
KQKRAKMETKDEDLLVAMAMSRSLLEQEKQEQAKLVTNVKPVAALPIKWKPGSEKRRRKR
GPTTPPPLLLQDPEKVRRRIEERVAMLLAQEMEFPPTPRLPTSRILEVEAGKAAWLLPLP
KNKDCFLWNFSALTGPCDPESFYAAGLTPPIEPWKPVQNHKPEDVLPSAGSDQPKVSQQI
QPDFGSHESTCREVRDQTCDEFKSGPEGDGQILSHSQEDIQNLQDLVELAKEGLTLTQWN
LDVGHTHAAEQSGKELTSSDTPCTGFVPSLEERRFLTRSCKKSSLRSLAEDFSAMVNNPH
LSDVQFQVDSGEVLYAHMFVLYARCPQAIQAVHSEGFLVEEDGNAQIRRVLLSDVTGEAA
RAFLRYLYAADADIPAEVVPQVGALAARFGVRELMAKCENNTGESQVSSGVDSESDLISV
TDDKDCEDRAENFQDLLKSVWVGEDEEEAAVLNQECQKEEDNAVGEQELEEIYEFAATQR
RMVQGKTTLSEGTDCSMCSDTEAAQDMNQQTEEEEVKRSVSSSVSSNFEDLRDNNDVEIS
RCDLSAEKEGMQNINRCRSVNATQITSVPNHREPQKRDVASRGATTDEGETIKRCEGGKD
SRSSQVSHDVKGEDHCEKEVLSFTTDTNINGSYEHLFSATQGDYCEPSPTKEVSKVSEKA
LGEKHADVNEFHLYSEIQKDFSPRKNGSYGSPSSKAFVPLFPAVGSSPLSPKSDRKLERE
HVSTPKQKKKSLPPVEIHFQKASELDAASPPGLPNTDLNKHVPVLSAPVIRTQDPAAQGS
KKGDVIVLSSDDEMELEDKKSPESGSVLKDVEIPGQLKGINIGHGPEIPKPEHNTSVTKT
EQRSLQVSNVVTDKVHVSNDVKMSTELPLSSHVDACTEGEQSPNLSPEKTLCHEVSSGTD
SSWLVPDTPVLTKSRSSSTQTHVTSINSSKSPESKVSTKNLAADISNHEMDRNVIGVHKA
ALSDEHLPVENCVSERSPSSSPGAGSVPEKPTPLSSVDPVLSLAHSNSKSKSANTSFLSK
LVPPCHGKSIEDKSNVSVVEIQDSEGEKETSIASLSSSVLLADEPAIPADDCWHAKCLSP
VRGNSQDSRQDGHANTRAASSPKTDFVHDQWDSPDQAWEIKGSTPVQGTPVGRRTSLLRL
EKSPIEACTSVGSRPSYLNSRLWDNWDGEEEEDEFPEVLPLSQRVSAAAREDPVKTPEPA
CQENNNSPRTPVTPMPAYSMMETPQLKDELKRFGVRALPKRQMVLKLKEIFQYTHRDVDS
DFEDEVPSSQPPQKESPPKRCRQSKAAQTTGGKRPRASKAASKRKQVATGSSVLPVGRSE
DDLVGPSEKGCAAPKQRNEMEHHPEGGKEQKRSAVSPEGWSLGADGEEPMLSASQESAAT
SGDGSDISFGSQSSFVKELETGAFASEEEEEELPASQAAAREEEKLEAVRCYIRSNPALY
DRILFYEPIELADLHAELKLNGIKISKAKLLDFLDAQCITFTTAGARKEKEQKRKGSRKK
RKRY
NT seq 5595 nt   +upstreamnt  +downstreamnt
atggatgaacaggacaatgattttaaagagttgtgggcaaatcttttgggtaaagggaag
aaaaaacctggggatgctgaggcagcaaagagggctcagaaaagatcaaagaatactgca
gcaaaaagcaaattaagaagaggcaaagctgctgctaagagccaaaaccatcacctcttt
ccagcagcaaagcaaaaaagcttgcttcaggatttgggtcctaagatacaaacactgggg
cacaaagaagacagtgacactgtggcctgcagtagtggtgagacttcagaaggggatgga
agcagaagccctttccctgccagccagctgagtaccacagccagtgactgtagccagggg
actctgacagtaaatactcggagtggttgttcccagacaacgttatctttccatcctgct
acacagtcagggacctgttcttcacccacctcgaagataccacctttcacaggctcaaag
gtgcgggtggcagagctggtagtggagaggatgcagcagttcaagagagtggcacctgat
cagctaaaacacagcacagattgtagcttgccaaagtccttagccagtggagattttgct
ggtgaaagccaggagcagaactcaccagagagtgatctccatgatcttccatccatgcag
catgacggtgctctggctttggccctgcagcaggaaacacaaaaggaatccctggaaagc
ctggaggatgcaggcttgttcttctgtcagatctgccagaaggatctctcagctatgaac
tcaacgcgacgagagcagcatgttaacaggtgtctggatgagatggaagaagcacagatg
tcatcctccagcaaaccagcagtccctgaatgtcccatctgtgggaagcaattccaaacc
ccccaaagccgagtcagtcacttgaaacgctgtgctgtcgagatggatgttcctcctaag
atgcttcttcaggcagtgcagatgcaggtgtccacgcttggtgaggcacctcttcagttt
cccaacaatcaaccaagcaggtcaaagcgaaaagtctccaccaaagaggactcaaagaac
aagcagaagagggcaaaaatggagacgaaggatgaagatttgctggttgctatggcaatg
tcacgctctctgttggagcaagaaaagcaggaacaagcaaaattagttacaaatgtgaaa
ccagtggctgctttgccaatcaaatggaagccaggatcagaaaaaaggaggcgtaaaaga
ggcccaactacccctccaccattactgctgcaggatccagagaaggtgcgcagaaggata
gaggagcgggtcgctatgctgcttgcacaagagatggaattccctcccactcctcggctt
cccaccagcaggattttggaggttgaagctgggaaagcagcctggctcctgccattgccc
aaaaacaaggactgctttttgtggaatttcagtgctctgacaggcccctgtgaccccgaa
tcattctatgctgctggattaacccctccaattgaaccttggaagcctgtgcagaatcat
aaaccagaggatgttctgccatcagcaggatctgatcagccaaaggtatcccagcaaatt
cagcctgactttggttctcatgagtccacttgtagagaggttagagaccaaacttgtgat
gaattcaagtcaggccctgaaggagatgggcagattttatctcacagccaggaggatatt
cagaacctgcaggatctagttgaacttgccaaggaaggacttacccttactcagtggaac
cttgatgttggccatactcatgcagcagagcagtcaggaaaagaactgacttccagtgat
actccatgtactggttttgtcccttcacttgaagagaggagattcctgacacgcagctgt
aagaaatcctccctgaggtcactggctgaagatttcagtgcgatggtcaacaacccccac
ttaagtgacgtccagttccaggtggactctggggaagtcctttatgctcacatgtttgtg
ttgtatgcacggtgtccgcaggccattcaggctgttcacagtgaagggttcttagtggag
gaggatgggaacgcgcagatacgccgtgtgctgctgagcgatgtgacaggagaggcagcc
cgtgcattcctgcggtacctttatgctgctgatgctgacatccctgctgaggtggtgccc
caggtgggggctctggctgccaggtttggtgtgagggagctgatggcaaagtgtgaaaat
aacactggagagagtcaggtgtcttccggagtggattcagaaagtgatctgatctctgtg
acagatgacaaagattgcgaggacagagcagagaacttccaagacctcttgaagtctgtg
tgggtgggtgaggatgaggaagaagcagctgtcctcaaccaggagtgccagaaggaagaa
gacaatgcggtgggtgaacaggagctggaagaaatctatgagtttgctgcaactcaaaga
aggatggttcaaggaaaaacaacactgagtgaaggaactgactgcagcatgtgcagtgac
actgaggcagcccaagatatgaaccagcaaactgaggaggaagaggtaaagagatctgta
tcttcttcagtaagcagtaacttcgaggatctgagggataacaacgatgtggaaatatct
agatgtgacttatctgcagaaaaagagggaatgcagaatataaatagatgcagaagcgtg
aatgctacgcagatcacttctgtgcctaaccacagagaacctcagaagagggatgtagca
tcccgtggtgccaccacagatgaaggagagactataaagagatgtgaaggtggaaaggac
tccaggtcatctcaagtctcacatgatgtaaaaggggaagatcactgtgaaaaagaggtt
cttagcttcaccactgatactaatataaatggcagttatgaacacttattttctgcaact
cagggagattactgtgagccttccccaacaaaagaagttagtaaagtatcagaaaaggct
cttggtgaaaagcatgctgatgttaatgaatttcatctgtacagcgaaatacagaaagac
ttttctccacgtaaaaatggttcttatgggagtccttcttccaaagcttttgtgcctctt
tttcctgctgttggatcttcacctttgtctcccaaatcagacagaaagcttgagagagaa
catgtgtcaacaccaaaacaaaagaaaaaatcactcccacctgttgaaattcattttcag
aaggccagtgagctggatgctgcatctccaccagggcttcccaacactgatttaaacaag
cacgtcccagtgttgtcagcaccagttatcagaactcaggatcctgcagctcaggggagc
aagaagggtgatgttattgttttatcttctgatgatgaaatggagttagaagacaagaag
tcaccggagtcaggctctgttctgaaggatgtagaaatccctgggcaactgaaaggtata
aatataggacatggtcctgagataccgaagcctgaacataacacatcagtcactaagaca
gagcagagatcactgcaggtctcaaatgtcgttacagataaggtgcatgtaagtaatgat
gtaaagatgtccactgaattgcctctcagtagccacgtagatgcttgtacagagggtgag
caaagcccaaacctgagccctgaaaaaacactctgtcatgaagtgtcttcaggtacagac
agctcctggctagtgccagacacaccagttctgaccaaaagcagaagttcctcaacacag
acgcatgtcacaagtattaactcttccaagagtccggaatctaaagtcagtacaaaaaac
ctagcagctgatattagtaaccatgaaatggatagaaatgtaataggagttcataaagca
gcattgtcagacgaacatttgcctgtggagaactgtgtcagtgaaagaagtccttccagc
agcccaggagcaggatcagttcctgagaaacccacaccactttcttcagtggatccagtt
ctctcccttgcccacagcaactcgaaaagcaaaagtgctaatacctcatttttgtccaaa
cttgtgcctccttgccatgggaagtcaatagaagataaatcaaatgtcagcgtggttgag
atacaggacagcgagggggagaaggaaacaagcatagcatctttgagcagtagtgtcttg
cttgctgacgagcctgcaattcctgctgatgactgctggcatgctaagtgtctgtcacca
gtcagaggtaacagccaggactccagacaggatggccatgcaaacaccagagctgccagc
agccccaaaactgactttgtgcatgaccagtgggacagcccagaccaagcgtgggaaatt
aagggcagcactcctgttcaaggaactcctgttggcagaagaacatctttgctccgtctt
gaaaagagtcccattgaggcatgtacatcagtgggtagtagaccgagttaccttaactcc
agactctgggataactgggatggagaagaggaggaagatgaatttccagaggtgcttcct
ctgtcacagagggtatcagcagcagcacgtgaagatcctgttaagactcctgaacctgcc
tgtcaagagaacaacaattctcccaggactccagtgacaccaatgccagcttactccatg
atggagacaccacaactgaaggatgagttgaaaagatttggagtccgtgctctcccaaaa
cgccagatggtgttgaaactgaaagagatattccagtatactcaccgggacgtggactct
gactttgaggatgaagtcccatcctcccagcctccccagaaggagtcccctcccaaacgc
tgtaggcagtcaaaggcagcccagactacaggtggaaagcgtcccagagcctcgaaggct
gcgagcaaaaggaagcaggttgcaacaggttcctcagtgctccctgtagggaggagtgag
gatgaccttgtcggaccctctgaaaaaggctgtgcagcacccaagcagagaaatgaaatg
gagcatcatccagaaggaggcaaagagcagaaaaggtcagctgtatctccagagggatgg
tctctgggagctgatggtgaggaaccaatgctctccgcatctcaggagtctgcagctact
tcaggggatggaagtgacatctctttcggttcacagagttcttttgtgaaggagttggag
actggtgcgtttgcatctgaagaggaggaagaagaacttccagcatcccaggcagcagct
cgggaagaagaaaaactggaggcagtgaggtgctacatccgctcaaacccagccctgtac
gacaggattctcttctatgagcctattgagctggctgacctgcacgcagagttgaaactg
aatggcattaagatttccaaggcaaagctgctggacttcttagatgctcagtgcatcacc
tttaccacagctggagcccggaaagagaaggaacagaagagaaaggggagcagaaaaaag
aggaaacgatactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (55)   
   KEGG ORTHOLOGY (1)   
   RefGene (49)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (10)   
   RefSeq(pep) (10)   
DNA sequence (24)   
   RefSeq(nuc) (10)   
   GenBank (7)   
   EMBL (7)   
Protein domain (7)   
   Pfam (7)   
All databases (101)   

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