KEGG   Heterocephalus glaber (naked mole-rat): 101704077
Entry
101704077         CDS       T02812                                 
Symbol
Snrnp200
Name
(RefSeq) small nuclear ribonucleoprotein U5 subunit 200
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
hgl  Heterocephalus glaber (naked mole-rat)
Pathway
hgl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hgl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101704077 (Snrnp200)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hgl03041]
    101704077 (Snrnp200)
Enzymes [BR:hgl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     101704077 (Snrnp200)
Spliceosome [BR:hgl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    101704077 (Snrnp200)
 Complex C
   U5 SnRNP specific factors
    101704077 (Snrnp200)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 PhoH SWI2_SNF2 Sigma54_activ_2 DUF603
Other DBs
NCBI-GeneID: 101704077
NCBI-ProteinID: XP_004844414
UniProt: G5BMV9
Position
Un
AA seq 2136 aa
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYHAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLVILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDSLGLFLREGSASTEVLRTEADQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq 6411 nt   +upstreamnt  +downstreamnt
atggcggatgtgactgcccgtagcctgcagtacgagtacaaggcgaactcgaatcttgtg
ctccaagctgaccgctctctcattgaccggacccggcgggatgaacccacaggggaggtg
ctgtcactggttgggaagctggagggcactcgaatgggagataaggctcagcggaccaaa
ccacagatgcaagaggaaagaagagccaagcgaaggaaacgagatgaggaccgacatgac
atcaacaagatgaagggttatactctgctgtcagagggcattgatgagatggtaggcatc
atctacaagcccaaaaccaaggagacccgggagacctatgaggtgctgctcagcttcatc
caggctgctctgggggatcagccacgtgatattctttgtggggcagctgatgaagttctg
gctgtcctgaaaaatgaaaaactgagagacaaggaaaggcgaaaagagattgacctgctg
ctgggtcagacagatgataccagataccatgtgctagtgaacttgggcaaaaagatcaca
gactatggtggagacaaggaaatccaaaacatggatgacaacatcgatgagacctatggg
gtgaatgtgcagtttgaatctgatgaggaggaaggtgatgaagatgtgtatggggaggtt
cgagaagaggcatctgatgatgacatggaaggggacgaggctgttgtgcgctgcaccctc
tctgctaatcttgtagcctccggtgagctgatgagttccaagaagaaggatttgcaccct
cgggatattgatgccttctggctacagaggcagctcagtcgtttctatgatgatgccatc
gtctcacagaagaaggcagacgaggtgttggagatcttgaagacagccagtgatgaccgg
gaatgtgagaaccagctggttctgctcctgggtttcaacacattcgatttcattaaagtg
ctacggcagcaccggatgatgattttatactgcactttgctggccagcgctcagagtgaa
gctgaaaaggaaaggatcatgggaaaaatggaagctgatccagagctgtccaaattcctc
taccagctccatgagactgagaaggaggatctgatccgagaagaaaggtcccggagagag
cgagttcgtcagtcccgaatggacacggatctggaaaccatggatctggaccaaggtgga
gaggcactggctccacggcaggttctagacttggaggacctggtttttacccaggggagt
cacttcatggccaacaaacgctgtcagcttcctgatggctcctttcgtcgccagcgtaag
ggctatgaggaggttcacgtgcctgctttgaagcccaagcccttcggctcagaagaacaa
ttgcttccagtagagaagctgccaaagtatgcccaggctggatttgagggcttcaaaaca
ctgaaccgaatccagagtaaactctaccatgctgcgctggagacggatgagaacctgctg
ctgtgtgctcctactggtgccgggaagaccaatgtagccttgatgtgcatgctccgagag
atagggaagcacataaacatggatggcaccatcaacgtggatgacttcaagatcatctac
attgctcccatgcgctccttggtgcaggagatggtgggcagttttggaaagcgcctggcc
acttacggcatcactgttgctgagctgactggggaccaccagctgtgtaaggaggagatc
agcgccactcagatcattgtctgcaccccagagaagtgggacatcatcacccgcaagggt
ggtgagcgcacctacacccagctggtgcggcttgtcatcctggatgagatccatcttctc
catgatgacagaggtcctgtcttagaagctttggtagccagagccattcgaaacattgaa
atgacccaagaagacgttcgactcattggcctcagtgccaccctccccaactatgaagat
gtggccacctttctgcgtgtcgaccctgccaagggcctcttctactttgacaacagcttc
cgcccagtccctctggaacagacgtatgtgggcatcacagagaaaaaagctatcaagcgt
ttccagatcatgaatgaaattgtctatgagaaaatcatggaacatgctggaaaaaatcag
gtgctggtgtttgtccactctaggaaggagactgggaagacggccagggccatccgggac
atgtgcctggagaaggacagtctgggtctgtttctgagagaaggctcagcctccacggag
gttcttcggacagaagcagatcagtgcaagaacctggagctaaaggatttgcttccttat
ggcttcgctattcatcatgcgggtatgaccagagtcgaccggacgctggtggaagatctc
tttgctgataaacatattcaggttttagtttccacagcaactctggcctggggtgtgaat
ctccctgcccatacagtcatcatcaaaggtactcaggtgtatagtccagagaaggggcgc
tggacagaactgggagctctggacatcttgcagatgctgggccgtgctggccgaccgcag
tacgacaccaagggcgaaggcatactcatcacgtctcatggggagctgcagtactacctg
tccctcctcaaccagcagctacctattgagagccagatggtgtcgaagcttcctgacatg
ctcaacgcagagattgtgctgggcaatgtccagaatgcaaaggatgcggtgaactggctg
ggctatgcctacctatatatccggatgctccggtccccaaccctctatggcatctctcac
gatgacctcaagggagaccccttgctggaccagcgccgactagatctggttcacactgct
gccttgatgctggacaagaacaatctggtcaagtacgataagaagacaggcaacttccag
gtgacagaactgggccgtatcgccagccactactatatcaccaatgacacagtacaaacc
tacaaccagctgctgaagcccaccctcagtgagattgagcttttccgagttttctcattg
tcctcagagttcaagaacatcaccgtgagagaggaggagaagctggagctgcagaagttg
ctagagagggtgcccatccccgtgaaggagagcattgaggagcccagcgccaagatcaac
gttctcctccaagccttcatctcacagctgaaattggagggctttgcgctgatggccgac
atggtgtatgttacacagtcggctggccggttgatgcgtgcaatcttcgaaattgtcctg
aaccgaggttgggcacagctcacagacaagaccctgaacctctgcaagatgatcgacaag
cgcatgtggcagtccatgtgtcccctgcgccagttccgcaaactccctgaggaggtagtg
aagaagattgagaaaaaaaacttcccctttgagcgtctgtatgacctgaatcataatgag
ataggggagctcatccgaatgccgaagatggggaagaccatccacaagtacgtccatctg
ttccccaagctggagttgtcggtgcacctgcagcccatcacgcgctccaccctgaaggtg
gagctcaccattacaccggatttccagtgggacgagaaggtgcatggctcatcagaggcc
ttctggattttggtggaggacgtggacagcgaggtgatcctgcaccatgagtactttctg
ctcaaggccaagtacgcccaggatgagcacctcattacattcttcgtgcccgtctttgag
ccgctgccccctcagtacttcatccgagtggtgtccgaccgctggctctcttgtgagaca
cagctgcctgtctctttccgccacctgatcctcccagagaagtacccacctcccactgag
ctgctggacctgcagcccttgcctgtgtccgcgctgaggaacagtgcttttgagagcctt
taccaagataaattccctttcttcaatcctatccagactcaagtgttcaacacagtgtac
aacagtgatgacaacgtgttcgtgggtgcccccacgggcagcgggaaaaccatatgcgcg
gagtttgccatcctgcggatgctgctgcaaaactcagaggggcgctgcgtctacatcact
ccaatggaggccctggcagagcaggtgtacatggactggtacgagaagttccaggaccgg
ctcagcaagaaagtggtgctcctgacgggtgagaccagcacagacctgaaacttttgggc
aagggcaacatcatcatcagtacgcctgagaaatgggacatcctctcacggcgatggaag
cagcgcaagaacgtccagaacatcaacctcttcgtggtggatgaggtccacctcatcggg
ggcgagaatgggcctgtcttagaggtgatctgctcccggatgcgctacatctcctcccag
atcgaacggcccatccgcattgtggccctcagctcctcactatccaatgccaaagatgtg
gcccactggttgggctgcagtgccacctccaccttcaacttccaccctaacgtgcgcccg
gtgcccttggagctgcacattcagggcttcaacatcagccacacacagacgcgccttctg
tccatggccaagcctgtgtaccatgccatcaccaagcactcgcccaagaagcccgtcatt
gtttttgtgccatcacgcaagcagacccgccttaccgccattgacatccttaccacttgt
gcagctgacatccagcggcagaggttcctgcactgcactgagaaggatctgatcccgtac
ctggagaagctgagtgacagcacgctcaaggagacgttgctgaatggtgtgggctacctg
cacgaggggctcagccccatggagcggcgcctggtggaacagctcttcagctcaggggct
atccaggttgtggtggcttctcggagtctctgctggggcatgaacgtggctgcccatcta
gtgatcatcatggacacccagtactacaatggcaagatccacgcctatgtggactacccc
atctatgatgtgctgcaaatggtgggccatgccaaccgcccacttcaggatgacgagggc
cgctgcgtcatcatgtgtcagggctccaaaaaggatttctttaaaaagtttttatatgag
ccattgccagtagagtctcacctggaccactgtatgcatgaccacttcaatgctgagatt
gtcaccaagaccatcgagaacaagcaggatgctgtggactacctcacctggacctttctg
taccgccggatgacacagaaccccaattactacaacctgcagggcatctcccatcgccac
ttgtctgaccacttgtcagagctggtggagcagacactgagcgacctggagcaatccaaa
tgcatcagcattgaggacgagatggatgtggcgcctctgaacctgggcatgattgctgcc
tactattacatcaactacaccaccatcgagctcttcagcatgtcactgaatgccaagacc
aaggtgcgtgggctcatcgagatcatctccaatgcggcggagtatgagaacattcccatc
cggcaccacgaggacaacctcctgcgccagttggctcagaaggtcccccacaagctgaac
aacccaaagttcaacgatccacatgtaaagaccaacctgctgctgcaggctcacctgtcc
cgcatgcagctgagtgctgaactgcagtcagacacggaggagatcctcagcaaggcaatc
cggctcattcaggcctgtgtggacgtgctctctagcaacggctggctcagtcctgcgctg
gcagccatggagctggcccagatggtcacccaggccatgtggtccaaggactcctacctg
aagcagctgccgcacttcacctcagagcatatcaagcgctgcacggacaagggagtggag
agcgtcttcgacattatggagatggaggacgaggaacgaaatgcactgcttcagctcaca
gacagccagatcgcggatgtggcccgcttctgcaaccgctatcccaacattgaactgtct
tacgaagtggtggataaggacagcatccgaagtggtgggccagttgtggtgctggtgcag
ctggagcgagaggaagaggtcacaggccctgtcattgcacctctcttcccgcagaagcgt
gaagagggctggtgggtggtgattggagatgccaagtccaacagccttatttccatcaag
cggctgaccttgcagcagaaggccaaggtgaagctggacttcgtggctcccgccaccggt
gcccacaattacaccctgtacttcatgagtgatgcatacatgggctgtgaccaggagtac
aaattcagcgtggatgtgaaagaagctgagacagatagtgattctgattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (12)   
   Pfam (12)   
All databases (46)   

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