KEGG   Heterocephalus glaber (naked mole-rat): 101706571
Entry
101706571         CDS       T02812                                 
Symbol
Vps39
Name
(RefSeq) VPS39, HOPS complex subunit
  KO
K20183  Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
hgl  Heterocephalus glaber (naked mole-rat)
Pathway
hgl04140  Autophagy - animal
hgl04148  Efferocytosis
hgl05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:hgl00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    101706571 (Vps39)
   04148 Efferocytosis
    101706571 (Vps39)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    101706571 (Vps39)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hgl04131]
    101706571 (Vps39)
Membrane trafficking [BR:hgl04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    101706571 (Vps39)
SSDB
Motif
Pfam: Vps39_2 Vps39_1 CNH Clathrin WD40_like Lgl_C EcoR124_C
Other DBs
NCBI-GeneID: 101706571
NCBI-ProteinID: XP_004861696
UniProt: A0A0P6J9K6
Position
Un
AA seq 875 aa
MHDAFDPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITLVSKAKGASLFTCDLHHTETGE
EVLRMCVAVKRKLHLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSVKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTLEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPALSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDRVLGFLIENFKSLAVPYLEHIIHIW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSCSAGKAPVPAGEEGGELGEYRQKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTRMAEEYCHKHYDQSK
DCNKDVYLSLLRMYLSPPSIHCLGPMKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQVNDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNAADT
NT seq 2628 nt   +upstreamnt  +downstreamnt
atgcacgacgcttttgatccggtgccgatcctagagaagctgcctctgcagatcgactgc
ctggctgcctgggaagaatggcttcttgttggaaccaaacaaggacatcttcttctctat
aggattcggaaggatgttggttgcaacagatttgaagtaactcttgagaaatccaataag
aacttctccaaaaagattcaacagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaacaacatttatgtccatgatctcttgacatttcaacaaatcactctagtc
tcaaaggcaaagggagcatcgctgttcacctgtgacctccatcacacagagactggcgag
gaggtgttgcggatgtgtgtggcagtaaaaaggaaactgcacctctatttctggaaggac
agggagtttcatgaattgcagggggactttagtgtgccagatgtacccaagtctatggcc
tggtgtgaaaattccatctgtgtgggtttcaagagagactactacctaataagggtggat
ggaaaggggtctgtcaaagagctcttcccaacaggaaaacagctggaacctttagtcgca
cctctggcagatgggaaggtggctgtgggtcaggatgatctcaccgtggtgctcaatgaa
gaggggatctgcacccagaagtgcgccctgaactggacagacatcccagtggccatggag
caccaacccccctacatcatcgcagtgttgcctcgatacgtggagatccgcacacttgag
ccgaggcttctggtccagagcattgaacttcaaaggcctcgtttcattacctcaggggga
tcaaacattatctatgtggccagcaatcactttgtttggagactcattcctgtccccatg
gcaacccagatccaacagcttctccaggataaacagtttgaattggctttgcaactcgca
gaaatgaaagatgattctgacagtgagaagcagcagcaaatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgctttgatgagtccatgcaggtctttgctaag
cttggcacagatcccacccatgtgatgggcctgtaccctgacctgctgcccaccgactat
aggaagcagctgcagtaccctaacccgctgcccgcgctctcgggggctgagctggagaag
gcccacttagcgttgatcgactacctgacacagaaacgaagtcagttggtgaaaaagctg
aacgactctgaccaccagtccagcacctccccgctcatggaagggacgcccaccatcaag
tccaagaagaagctgctgcagatcatcgacaccaccctgctcaagtgctacctccatacg
aatgtggccctcgtggctcccttgctgcggctggagaacaatcactgccacattgaggag
agtgagcacgtgctgaagaaggctcacaagtacagcgagctgataatcctgtatgaaaag
aaggggctccatgagaaagctctgcaggtgctggtggaccagtccaagaaagcaaactcc
cctctgaagggccatgagaggacagtgcagtacctgcagcacctgggcacagaaaatctg
catttgattttttcctactcagtgtgggtgctgagagacttcccagaggatggcctgaag
atatttacggaagaccttccagaggtggaggctctgccccgagatcgagtgcttggcttc
ttaatagagaattttaagagtctggctgttccttatctggagcacatcatccacatctgg
gaagagacgggctctcgattccacaactgcctgatccagctatactgtgagaaggtgcag
gggctgatgaaggagtaccttctgtcctgctccgcaggcaaagccccagttcctgctgga
gaggaagggggcgagctgggagaataccggcaaaagctgctcatgtttttggagatttcc
agttactatgatccaggacggcttatctgtgattttccttttgatggcctcttagaagag
cgagcactcctactcgggcgcatggggaagcacgagcaagctcttttcatctatgtccat
gttttgaaggacactaggatggcagaggagtactgccacaagcattatgaccaaagcaaa
gattgcaacaaagatgtgtatctgtccctgcttcggatgtacctgtcaccccccagtatt
cactgtctcgggccaatgaagttggagttgctggaaccacaagccaacctccaggccgcc
ctgcaggtccttgagctgcaccatagcaagctggacaccaccaaggctatcaaccttctg
ccagcaaacactcaggttaatgacatccgcatctttctggaaaaggtgttagaagaaaat
gcacaaaaaaaacgcttcaatcaagtgctcaagaacctcctccatgctgagttcctgagg
gtacaggaagagcggattctgcaccagcaagtgaagtgcatcatcacagaggagaaggtg
tgcatggtgtgcaagaagaagattgggaacagtgcatttgcaagataccccaatggagtg
gttgtgcactacttctgttccaaagaggtaaacgcagctgacacctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (35)   

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