KEGG   Homo sapiens (human): 5725
Entry
5725              CDS       T01001                                 
Symbol
PTBP1, HNRNP-I, HNRNPI, HNRPI, PTB, PTB-1, PTB-T, PTB2, PTB3, PTB4, pPTB
Name
(RefSeq) polypyrimidine tract binding protein 1
  KO
K13218  polypyrimidine tract-binding protein 1
Organism
hsa  Homo sapiens (human)
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    5725 (PTBP1)
   03041 Spliceosome [BR:hsa03041]
    5725 (PTBP1)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Trans-acting binding proteins
     5725 (PTBP1)
Spliceosome [BR:hsa03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    5725 (PTBP1)
SSDB
Motif
Pfam: RRM_5 RRM_1 RRM_8 RRM_occluded Nup35_RRM
Other DBs
NCBI-GeneID: 5725
NCBI-ProteinID: NP_002810
OMIM: 600693
HGNC: 9583
Ensembl: ENSG00000011304
UniProt: P26599
Structure
Position
19:797452..812312
AA seq 557 aa
MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV
IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV
LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ
SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS
LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAP
GIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGA
GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL
NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA
TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH
DLGENHHLRVSFSKSTI
NT seq 1674 nt   +upstreamnt  +downstreamnt
atggacggcattgtcccagatatagccgttggtacaaagcggggatctgacgagcttttc
tctacttgtgtcactaacggaccgtttatcatgagcagcaactcggcttctgcagcaaac
ggaaatgacagcaagaagttcaaaggtgacagccgaagtgcaggcgtcccctctagagtg
atccacatccggaagctccccatcgacgtcacggagggggaagtcatctccctggggctg
ccctttgggaaggtcaccaacctcctgatgctgaaggggaaaaaccaggccttcatcgag
atgaacacggaggaggctgccaacaccatggtgaactactacacctcggtgacccctgtg
ctgcgcggccagcccatctacatccagttctccaaccacaaggagctgaagaccgacagc
tctcccaaccaggcgcgggcccaggcggccctgcaggcggtgaactcggtccagtcgggg
aacctggccttggctgcctcggcggcggccgtggacgcagggatggcgatggccgggcag
agccccgtgctcaggatcatcgtggagaacctcttctaccctgtgaccctggatgtgctg
caccagattttctccaagttcggcacagtgttgaagatcatcaccttcaccaagaacaac
cagttccaggccctgctgcagtatgcggaccccgtgagcgcccagcacgccaagctgtcg
ctggacgggcagaacatctacaacgcctgctgcacgctgcgcatcgacttttccaagctc
accagcctcaacgtcaagtacaacaatgacaagagccgtgactacacacgcccagacctg
ccttccggggacagccagccctcgctggaccagaccatggccgcggccttcggtgcacct
ggtataatctcagcctctccgtatgcaggagctggtttccctcccacctttgccattcct
caagctgcaggcctttccgttccgaacgtccacggcgccctggcccccctggccatcccc
tcggcggcggcggcagctgcggcggcaggtcggatcgccatcccgggcctggcgggggca
ggaaattctgtattgctggtcagcaacctcaacccagagagagtcacaccccaaagcctc
tttattcttttcggcgtctacggtgacgtgcagcgcgtgaagatcctgttcaataagaag
gagaacgccctagtgcagatggcggacggcaaccaggcccagctggccatgagccacctg
aacgggcacaagctgcacgggaagcccatccgcatcacgctctcgaagcaccagaacgtg
cagctgccccgcgagggccaggaggaccagggcctgaccaaggactacggcaactcaccc
ctgcaccgcttcaagaagccgggctccaagaacttccagaacatattcccgccctcggcc
acgctgcacctctccaacatcccgccctcagtctccgaggaggatctcaaggtcctgttt
tccagcaatgggggcgtcgtcaaaggattcaagttcttccagaaggaccgcaagatggca
ctgatccagatgggctccgtggaggaggcggtccaggccctcattgacctgcacaaccac
gacctcggggagaaccaccacctgcgggtctccttctccaagtccaccatctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (17)   
   OC (1)   
Protein sequence (10)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (33)   
   RefSeq(nuc) (9)   
   GenBank (12)   
   EMBL (12)   
3D Structure (12)   
   PDB (12)   
Protein domain (5)   
   Pfam (5)   
All databases (94)   

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