KEGG   Homo sapiens (human): 9525
Entry
9525              CDS       T01001                                 
Symbol
VPS4B, MIG1, SKD1, SKD1B, VPS4-2
Name
(RefSeq) vacuolar protein sorting 4 homolog B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
hsa  Homo sapiens (human)
Pathway
hsa03250  Viral life cycle - HIV-1
hsa04144  Endocytosis
hsa04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    9525 (VPS4B)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    9525 (VPS4B)
  09143 Cell growth and death
   04217 Necroptosis
    9525 (VPS4B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hsa04131]
    9525 (VPS4B)
   03400 DNA repair and recombination proteins [BR:hsa03400]
    9525 (VPS4B)
Membrane trafficking [BR:hsa04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    9525 (VPS4B)
DNA repair and recombination proteins [BR:hsa03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    9525 (VPS4B)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_14 RuvB_N AAA_5 AAA_22 IstB_IS21 AAA_25 AAA_18 DUF815 AAA_2 AAA_17 nSTAND3 AAA_33 RNA_helicase AAA_24 PhoH AAA_7 Mg_chelatase ResIII Parvo_NS1 NACHT AAA_28 bpMoxR KAP_NTPase TPR_1 DUF5906 MCM TPR_10 TPR_2
Other DBs
NCBI-GeneID: 9525
NCBI-ProteinID: NP_004860
OMIM: 609983
HGNC: 10895
Ensembl: ENSG00000119541
UniProt: O75351
Structure
Position
18:complement(63389190..63422476)
AA seq 444 aa
MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA
KCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADEKGNDSDGEGESDDPEKKKLQNQL
QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK
SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL
PEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSAT
HFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSN
TKPTVNEHDLLKLKKFTEDFGQEG
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgtcatccacttcgcccaacctccagaaagcgatagatctggctagcaaagcagcgcaa
gaagacaaggctgggaactacgaagaagcccttcagctctatcagcatgctgtgcagtat
tttcttcatgtcgttaaatatgaagcacagggtgataaagccaagcaaagtatcagggca
aagtgtacagaatatcttgatagagcagaaaaactaaaggagtacctgaaaaataaagag
aaaaaagcacagaagccagtgaaagaaggacagccgagtccagcagatgagaaggggaat
gacagtgatggggaaggagaatctgatgatcctgaaaaaaagaaactacagaatcaactt
caaggtgccattgttatagaacgaccaaatgtgaaatggagtgacgttgctggacttgaa
ggagccaaagaagcactgaaagaggctgtgatactgcctattaaatttcctcatcttttt
acaggcaagagaacaccttggaggggaatcctattatttgggccgcctggaacaggaaag
tcctacttagccaaagctgtagcaacagaagccaacaactcaacatttttttcaatatct
tcctctgatcttgtttctaagtggctaggtgaaagtgaaaaactggttaagaatttattc
caacttgccagagagaacaagccctccattatcttcattgatgaaattgattctctctgt
ggttcaagaagtgaaaatgaaagtgaagccgcacgtagaattaagacggagttcctagtg
caaatgcaaggggttggtgtagacaatgatggaattttggttctgggagctacaaatata
ccctgggttctggattctgccattaggcgaagatttgagaaacgaatttatattcccttg
ccggaaccccatgcccgagcagcaatgtttaaactgcacctagggaccactcagaacagt
ctcacggaagcagactttcgggaacttgggaggaaaacagatggttattcaggggcagat
ataagtatcattgtacgtgatgcccttatgcagcctgttaggaaagtacagtcagctact
cattttaaaaaggttcgcggaccttcccgagctgatcctaaccatcttgtagatgatctg
ctaacaccttgctctccaggtgaccctggtgccattgaaatgacatggatggatgtccct
ggagataaacttttggagccagttgtttccatgtcggatatgttgcggtcactatctaac
acaaaacctacagtcaatgaacatgacttgttgaaattaaagaagtttacagaagatttt
ggtcaagaaggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (4)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (25)   
   RefSeq(nuc) (3)   
   GenBank (11)   
   EMBL (11)   
3D Structure (7)   
   PDB (7)   
Protein domain (34)   
   Pfam (34)   
All databases (107)   

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