KEGG   Homo sapiens (human): 10285
Entry
10285             CDS       T01001                                 
Symbol
SMNDC1, SMNR, SPF30, TDRD16C
Name
(RefSeq) survival motor neuron domain containing 1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
hsa  Homo sapiens (human)
Pathway
hsa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    10285 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsa03041]
    10285 (SMNDC1)
Spliceosome [BR:hsa03041]
 Complex A
  U2 snRNP components
   U2 related factors
    10285 (SMNDC1)
 Complex B
    10285 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    10285 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR
Other DBs
NCBI-GeneID: 10285
NCBI-ProteinID: NP_005862
OMIM: 603519
HGNC: 16900
Ensembl: ENSG00000119953
UniProt: O75940
Structure
Position
10:complement(110290730..110304920)
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
SDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaggatttagcaaagcagctggcaagctacaaagctcagctccagcaagttgaa
gctgcattatctggaaatggagaaaatgaagatttgctaaaattgaagaaagatttacaa
gaagttatagaactaaccaaagaccttctgtcaactcaaccttctgagacgcttgcaagt
tcagacagttttgcttctactcaacctactcattcatggaaagtaggagacaagtgtatg
gcagtctggagtgaagatggacagtgttatgaagcggagattgaggagatagatgaagaa
aatggcaccgctgcaatcacctttgctggttatggcaatgctgaagtgactccactgttg
aacctcaagcctgtagaagaaggaaggaaggcaaaggaggacagtggcaacaaacccatg
tcaaaaaaagaaatgattgcccagcagcgtgaatataaaaagaagaaagctttgaaaaaa
gctcagagaataaaagaacttgagcaggaaagagaggaccagaaagtgaaatggcaacaa
ttcaacaacagagcctattctaaaaacaaaaaaggccaggtaaagaggagtatttttgct
tcacctgagagtgtgactggtaaagttggagtaggaacctgtggaattgctgataaacct
atgacacaatatcaagatacctctaaatacaatgtcaggcatttgatgcctcaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (5)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (15)   
   RefSeq(nuc) (3)   
   GenBank (6)   
   EMBL (6)   
3D Structure (3)   
   PDB (3)   
Protein domain (2)   
   Pfam (2)   
All databases (42)   

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