KEGG   Homo sapiens (human): 10388
Entry
10388             CDS       T01001                                 
Symbol
SYCP2, SCP-2, SCP2, SPGF1
Name
(RefSeq) synaptonemal complex protein 2
  KO
K19529  synaptonemal complex protein 2
Organism
hsa  Homo sapiens (human)
Disease
H01282  Spermatogenic failure
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hsa03036]
    10388 (SYCP2)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Meiosis-specific proteins
   Synaptonemal complex
    10388 (SYCP2)
SSDB
Motif
Pfam: SYCP2_ARLD SYCP2_SLD
Other DBs
NCBI-GeneID: 10388
NCBI-ProteinID: NP_055073
OMIM: 604105
HGNC: 11490
Ensembl: ENSG00000196074
UniProt: Q9BX26
Position
20:complement(59863571..59933637)
AA seq 1530 aa
MPIRPDLQQLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKVDNLICRELNK
EDIHNVSAILVSVGRCGKNISVLGQAGLLTMIKQGLIQKMVAWFEKSKDIIQSQGNSKDE
AVLNMIEDLVDLLLVIHDVSDEGKKQVVESFVPRICSLVIDSRVNICIQQEIIKKMNAML
DKMPQDARKILSNQEMLILMSSMGERILDAGDYDLQVGIVEALCRMTTEKQRQELAHQWF
SMDFIAKAFKRIKDSEFETDCRIFLNLVNGMLGDKRRVFTFPCLSAFLDKYELQIPSDEK
LEEFWIDFNLGSQTLSFYIAGDNDDHQWEAVTVPEEKVQIYSIEVRESKKLLTIILKNTV
KISKREGKELLLYFDASLEITNVTQKIFGATKHRESIRKQGISVAKTSLHILFDASGSQI
LVPESQISPVGEELVSLKEKSKSPKEFAKPSKYIKNSDKGNRNNSQLEKTTPSKRKMSEA
SMIVSGADRYTMRSPVLFSNTSIPPRRRRIKPPLQMTSSAEKPSVSQTSENRVDNAASLK
SRSSEGRHRRDNIDKHIKTAKCVENTENKNVEFPNQNFSELQDVIPDSQAAEKRDHTILP
GVLDNICGNKIHSKWACWTPVTNIELCNNQRASTSSGDTLNQDIVINKKLTKQKSSSSIS
DHNSEGTGKVKYKKEQTDHIKIDKAEVEVCKKHNQQQNHPKYSGQKNTENAKQSDWPVES
ETTFKSVLLNKTIEESLIYRKKYILSKDVNTATCDKNPSASKNVQSHRKAEKELTSELNS
WDSKQKKMREKSKGKEFTNVAESLISQINKRYKTKDDIKSTRKLKESLINSGFSNKPVVQ
LSKEKVQKKSYRKLKTTFVNVTSECPVNDVYNFNLNGADDPIIKLGIQEFQATAKEACAD
RSIRLVGPRNHDELKSSVKTKDKKIITNHQKKNLFSDTETEYRCDDSKTDISWLREPKSK
PQLIDYSRNKNVKNHKSGKSRSSLEKGQPSSKMTPSKNITKKMDKTIPEGRIRLPRKATK
TKKNYKDLSNSESECEQEFSHSFKENIPVKEENIHSRMKTVKLPKKQQKVFCAETEKELS
KQWKNSSLLKDAIRDNCLDLSPRSLSGSPSSIEVTRCIEKITEKDFTQDYDCITKSISPY
PKTSSLESLNSNSGVGGTIKSPKNNEKNFLCASESCSPIPRPLFLPRHTPTKSNTIVNRK
KISSLVLTQETQNSNSYSDVSSYSSEERFMEIESPHINENYIQSKREESHLASSLSKSSE
GREKTWFDMPCDATHVSGPTQHLSRKRIYIEDNLSNSNEVEMEEKGERRANLLPKKLCKI
EDADHHIHKMSESVSSLSTNDFSIPWETWQNEFAGIEMTYETYERLNSEFKRRNNIRHKM
LSYFTTQSWKTAQQHLRTMNHQSQDSRIKKLDKFQFIIIEELENFEKDSQSLKDLEKEFV
DFWEKIFQKFSAYQKSEQQRLHLLKTSLAKSVFCNTDSEETVFTSEMCLMKEDMKVLQDR
LLKDMLEEELLNVRRELMSVFMSHERNANV
NT seq 4593 nt   +upstreamnt  +downstreamnt
atgccaataagaccagatctccagcagttggaaaaatgcattgatgatgctttaagaaaa
aatgatttcaaacctttgaaaacacttttgcaaattgatatttgtgaagatgtgaagatt
aaatgcagcaaacagtttttccacaaggtggacaaccttatatgcagggaacttaataaa
gaggatatccacaatgtttcagccattttggtttctgttggaagatgtggcaaaaatatc
agtgtattggggcaagctggacttctaacgatgataaaacaaggactaatacaaaagatg
gttgcctggtttgaaaaatccaaggacattattcagagtcaaggaaattcaaaagatgaa
gctgttctaaatatgatagaagacttagttgatcttctgctggtcatacatgatgtcagt
gatgaaggtaaaaaacaagtagtggaaagtttcgtacctcgcatttgttccctggttatt
gactcaagagtgaatatttgtattcagcaagagattataaaaaaaatgaatgctatgctt
gacaaaatgcctcaagatgcccggaaaatactctctaaccaagaaatgttaattctcatg
agtagtatgggagaaaggattttagatgctggagattatgacttacaggtaggcattgta
gaagctttgtgtagaatgaccacagaaaaacaaagacaagaactggcacatcagtggttt
tcaatggattttattgctaaggcatttaaaagaattaaggactctgaatttgaaacagat
tgcaggatatttctcaaccttgtaaatggcatgcttggagacaaaagaagggtctttaca
tttccttgtttatcagcatttcttgataaatatgagctgcaaataccatcagatgaaaaa
cttgaggaattttggattgattttaatcttgggagtcagactctctcattctacattgct
ggagataatgatgatcatcaatgggaagcagttactgtgccagaggaaaaagtacaaata
tacagcattgaagtgagagaatcaaagaagctactgacaataattctgaaaaatacagta
aaaattagcaaaagagaagggaaagaattgcttttgtattttgacgcatcactagaaatc
actaatgtaactcaaaaaatttttggtgcaactaaacatagggaatctatcagaaaacaa
ggtatttcagttgccaaaacgtcgctgcatatactttttgacgcaagtggatcacagatt
ctagtgccagaaagtcaaatctcaccagtcggagaagagctcgttagtttaaaggaaaaa
tcaaagtccccaaaggaatttgctaaaccttcaaaatatatcaaaaacagtgacaaaggg
aatagaaataatagtcagcttgagaaaactactcctagcaaaagaaaaatgtctgaagca
tcaatgattgtttctggtgcagatagatacactatgagaagtccagtgcttttcagcaac
acatcaataccaccacgaagaagaagaattaaaccaccactgcaaatgacgagctctgca
gagaaacctagtgtttctcaaacatcagaaaatagagtggataatgctgcatcactgaaa
tctagatcatcagaaggaagacatagaagagataatatagacaaacatatcaaaactgct
aagtgtgtagaaaacacagaaaataagaatgttgaattcccaaaccaaaattttagtgaa
ctccaggatgttataccagattcacaggcagcggaaaaaagagatcatactatattacct
ggtgttttagacaacatctgtggaaataaaatacacagcaaatgggcatgttggacacct
gtaacaaacattgaactatgtaataaccaaagagcaagtacttcgtcaggagacacattg
aatcaagatattgttataaataaaaaacttactaaacaaaaatcatcctcttcaatatct
gatcataattctgaaggaacaggaaaagtgaaatataagaaagaacaaaccgaccatatc
aaaatagataaagcagaagtagaagtttgcaagaaacacaatcagcaacaaaatcatcct
aaatattcagggcagaaaaatactgaaaatgccaagcagagtgattggcctgttgaatct
gaaactacttttaaatcggttctcctaaataagacaattgaagaatcgctgatatatagg
aagaaatacatattgtcaaaagatgtgaatactgctacttgcgataaaaatccatctgct
agcaaaaatgtgcaaagtcatagaaaagcagagaaagaattgacttctgagcttaattcc
tgggattcgaaacaaaaaaaaatgagagaaaagtcaaaagggaaagaatttaccaatgta
gcagaatccttgataagccaaatcaataaaagatacaaaacaaaagatgacatcaagtct
acaagaaaattaaaggagtctttgattaacagtggtttttcaaacaaacctgttgtacaa
ctcagtaaggaaaaagttcagaaaaaaagctacagaaaactgaagactacctttgttaat
gttacttctgaatgcccagtgaatgatgtttacaattttaatttgaatggagctgatgac
cctatcataaaacttggaatccaagagtttcaagctacagctaaagaagcttgtgcggat
aggtcaattagattggtaggtccaaggaatcatgatgaacttaaatcttctgtcaaaaca
aaagataaaaaaattataacaaatcatcaaaagaaaaatctgtttagtgatactgaaaca
gagtacagatgtgatgacagcaagactgatattagctggctaagagaaccgaaatcaaaa
ccacagctaatagactatagcagaaataaaaatgtgaagaatcataaaagtggaaaatca
agatcatccttggaaaagggacagccaagctctaaaatgacacccagtaaaaatatcaca
aaaaagatggacaagacaattccggaaggaagaatcagacttccacgaaaagcaaccaaa
acaaaaaaaaactataaagatctctcaaattcagaatcagagtgtgaacaagaattttca
cattcatttaaagagaacataccagtaaaggaggagaatatccattccagaatgaaaacg
gtaaagctaccaaagaaacaacagaaagtcttctgtgctgaaacagaaaaggaactatca
aaacaatggaaaaactcatctctactaaaagatgctatacgagataattgccttgactta
tctcccagatctttatctggcagtccatcatctatagaagtaacgagatgtatagagaaa
ataacagaaaaggattttactcaggattatgactgcataacaaaatctatatcaccttat
ccaaaaacttcatcacttgaatccttaaatagtaacagtggagttggaggtacaataaag
tcacccaaaaacaatgagaaaaacttcctgtgtgcaagtgaaagttgttcaccaattcca
cgaccactgtttttgcccagacatactccaactaagagtaatactattgtaaatagaaaa
aaaataagttctctggtacttacacaagaaacacaaaacagtaacagctattcagatgta
agcagttatagttcagaagaacggtttatggaaattgaatctccacatatcaatgaaaat
tatatacaaagcaaaagagaggaaagtcatttagcatcttcattatccaagtctagtgaa
ggaagagagaaaacgtggtttgacatgccctgtgatgctactcatgtatcaggccccacc
caacatcttagtcgcaaaagaatatatatagaagataatctaagtaattccaatgaagta
gaaatggaagagaaaggagaaaggagagcaaacttgcttcccaaaaaactgtgtaaaatt
gaagatgcagatcatcatatccacaaaatgtctgaaagtgtatcttcattatcaacaaat
gacttttctattccttgggagacctggcaaaatgaatttgcagggatagagatgacttat
gagacttacgagaggctcaattcagaatttaagagaaggaataatatccgacataaaatg
ttgagttattttactacgcagtcttggaaaacagctcagcaacatctgagaacaatgaat
catcaaagtcaggactctaggattaaaaaacttgataaattccaattcattatcatagag
gagctggagaattttgaaaaagattcacagtctttaaaagatttggaaaaggaatttgtg
gacttttgggaaaagatatttcagaagttcagtgcatatcaaaaaagcgaacaacagagg
cttcatcttttgaaaacttcattggctaaaagtgtcttctgtaatactgatagtgaagaa
actgtttttacatccgagatgtgtttgatgaaagaagatatgaaagtgctgcaagacagg
cttcttaaggacatgctagaagaggagcttcttaatgtacgcagagaactgatgtcagta
ttcatgtctcatgaaagaaatgctaatgtgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Disease (3)   
   KEGG DISEASE (1)   
   OMIM (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (25)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (23)   
DNA sequence (47)   
   RefSeq(nuc) (23)   
   GenBank (12)   
   EMBL (12)   
Protein domain (2)   
   Pfam (2)   
All databases (121)   

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