KEGG   Homo sapiens (human): 11157
Entry
11157             CDS       T01001                                 
Symbol
LSM6, YDR378C
Name
(RefSeq) LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
hsa  Homo sapiens (human)
Pathway
hsa03018  RNA degradation
hsa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    11157 (LSM6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    11157 (LSM6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    11157 (LSM6)
   03041 Spliceosome [BR:hsa03041]
    11157 (LSM6)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     11157 (LSM6)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     11157 (LSM6)
Spliceosome [BR:hsa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    11157 (LSM6)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 11157
NCBI-ProteinID: NP_009011
OMIM: 607286
HGNC: 17017
Ensembl: ENSG00000164167
UniProt: P62312
Structure
Position
4:146175718..146191535
AA seq 80 aa
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
GDAFIRGNNVLYISTQKRRM
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtcttcggaagcaaacccctagtgacttcttaaagcaaatcatcggacgaccagtt
gtggtaaaattaaattctggagtggattatcgaggggtcctggcttgcctggatggctac
atgaatatagccctggagcagacagaagaatatgtaaatggacaactgaagaataagtat
ggggatgcatttatccgaggaaacaatgtgttgtacatcagtacacagaagagacggatg
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (296)   
   KEGG ORTHOLOGY (1)   
   RefGene (281)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (9)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (21)   
   RefSeq(nuc) (7)   
   GenBank (7)   
   EMBL (7)   
3D Structure (7)   
   PDB (7)   
Protein domain (2)   
   Pfam (2)   
All databases (340)   

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