KEGG   Homo sapiens (human): 11325
Entry
11325             CDS       T01001                                 
Symbol
DDX42, DDX42P, RHELP, RNAHP, SF3B8, SF3b125
Name
(RefSeq) DEAD-box helicase 42
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:3.6.4.13]
Organism
hsa  Homo sapiens (human)
Pathway
hsa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    11325 (DDX42)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsa03041]
    11325 (DDX42)
Spliceosome [BR:hsa03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    11325 (DDX42)
 Complex B
    11325 (DDX42)
 Complex C
   U2 SnRNP specific factors
    11325 (DDX42)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII ERCC3_RAD25_C P-loop_SecA
Other DBs
NCBI-GeneID: 11325
NCBI-ProteinID: NP_031398
OMIM: 613369
HGNC: 18676
Ensembl: ENSG00000198231
UniProt: Q86XP3
Structure
Position
17:63773800..63819317
AA seq 938 aa
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENMDRGNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQK
AGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPVTSAAKGIPGFGNTGNISGAPVTYP
SAGAQGVNNTASGNNSREGTGGSNGKRERYTENRGSSRHSHGETGNRHSDSPRHGDGGRH
GDGYRHPESSSRHTDGHRHGENRHGGSAGRHGENRGANDGRNGESRKEAFNRESKMEPKM
EPKVDSSKMDKVDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq 2817 nt   +upstreamnt  +downstreamnt
atgaactggaataaaggtggtcctggcactaagcgaggatttggctttggaggttttgcc
atcagtgctgggaaaaaggaggaacccaaactcccacagcagtcccacagtgcctttggg
gcaaccagctcttcttctggatttggaaagtcagctccaccacagcttccttctttctac
aaaattggatctaagcgggccaactttgatgaagaaaatgcctattttgaagatgaggaa
gaagattctagcaacgttgatttaccttacattcctgctgaaaactcaccaactcgccag
caattccattccaagccagtagattctgacagcgatgatgatcccttggaggcattcatg
gctgaagtggaggatcaggcagctagagacatgaagaggcttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcagaaaacccaactgctggtgtggttcaggaggaagaggaagacaat
ctagaatatgatagtgacggaaatccaattgcacctaccaaaaaaatcattgatcctctt
ccccccattgatcattcagagattgactatccaccatttgaaaaaaacttttacaatgag
catgaagagataaccaacctcactccacagcagttaatagatctccggcataagctcaat
cttcgggtctctggtgctgcacctcctagaccaggaagtagctttgctcattttgggttt
gacgaacaacttatgcaccagattcggaaatctgaatacacacagcccactccaatacag
tgccagggtgtgcctgtggcattaagtggtagagacatgattggtattgccaaaacaggt
agtgggaaaactgcagccttcatttggcccatgttgattcatataatggaccagaaggag
ttggaaccaggtgatggaccaattgcagtgattgtgtgtcctaccagggagctttgccag
cagatccatgcagaatgtaagcggtttggaaaagcatataatcttcgatcagtggccgta
tatggaggagggagtatgtgggagcaggccaaggcccttcaggagggggcagagattgtt
gtgtgtaccccaggtcgactgatagatcatgtgaaaaagaaagctaccaatcttcaaaga
gtctcttaccttgtgtttgatgaagcagatcgaatgtttgacatgggatttgagtaccaa
gttcgatccatagcaagtcatgttcgtcctgacaggcagactctcttatttagtgcaact
tttcggaagaagattgaaaagttggccagagacatcctgatcgaccctattcgagtggtg
cagggagatattggagaggcaaatgaagatgtgacacagattgtggagattctccattct
ggacctagtaaatggaactggcttacccggcgtctggtagaatttacctcttcagggagt
gtcctcctctttgttactaaaaaagccaatgctgaagagctagcgaataaccttaaacag
gagggtcataatcttgggctgctccatggggatatggatcagagtgagagaaacaaggtc
atttcagactttaagaaaaaggacatcccagtcctggtggccacagatgttgcagcccgt
ggtctggacattccttcaattaagactgtcattaactatgatgtggcacgagacattgat
acccacacgcataggattggccgcacaggaagagcgggtgagaaaggtgtggcctatacc
ctactcactcccaaggacagcaattttgctggtgacctggtccggaacttggaaggagcc
aatcaacacgtttctaaggaactcctagatctggcaatgcagaatgcctggtttcggaaa
tctcgattcaaaggagggaaaggaaaaaagctgaacattggtggaggaggcctaggctac
agggagcggcctggcctgggctctgagaacatggatcgaggaaataacaatgtaatgagc
aattatgaggcctacaagccttccacaggagctatgggagatcgactaacggcaatgaaa
gcagctttccagtcacagtacaagagtcactttgttgcagccagtttaagtaatcagaag
gctggaagttctgctgctggggcaagtgggtggactagtgcagggagcttgaattctgtt
ccaactaactcagcacaacagggccataacagtcctgacagccccgtcaccagtgccgcc
aagggcatcccaggctttggcaatactggcaacatcagtggtgcccctgtgacctacccg
tctgccggagcccaaggagtcaacaacacagcttcagggaataacagccgagaagggact
gggggcagcaacgggaaaagagagagatatactgagaaccggggcagcagccgtcacagt
cacggagagactggcaatcggcatagcgatagtccacgtcacggagatggtggtcgccat
ggagatggataccgccatccagaaagcagcagccgtcatactgatggccatcggcacggg
gagaacagacatggaggaagcgcaggccggcatggggagaaccggggtgcaaatgatggt
cggaatggggaaagcaggaaagaagcttttaatcgtgagagcaagatggagcccaagatg
gaacccaaagtggacagcagcaagatggacaaggtggacagcaagacagataagacagct
gacggctttgctgtcccagagccgcctaaacgcaagaaaagtcgatgggacagttag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Disease (1)   
   OMIM (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (7)   
   OC (1)   
Protein sequence (10)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (44)   
   RefSeq(nuc) (8)   
   GenBank (18)   
   EMBL (18)   
3D Structure (3)   
   PDB (3)   
Protein domain (5)   
   Pfam (5)   
All databases (101)   

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