KEGG   Homo sapiens (human): 11346
Entry
11346             CDS       T01001                                 
Symbol
SYNPO, SYNPO1
Name
(RefSeq) synaptopodin
  KO
K21112  synaptopodin
Organism
hsa  Homo sapiens (human)
Pathway
hsa04530  Tight junction
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    11346 (SYNPO)
SSDB
Motif
Pfam: Calsarcin
Other DBs
NCBI-GeneID: 11346
NCBI-ProteinID: NP_001159680
OMIM: 608155
HGNC: 30672
Ensembl: ENSG00000171992
UniProt: Q8N3V7
Position
5:150586010..150659207
AA seq 929 aa
MLGPHLPPPPLAPSEGRPTPCAFQIPDGSYRCLALEAEESSGEEGLQGEVGPTDLEEDEG
VSRSGDDSACRVTQGTPQLPKALGIQPPSCSREEQGASQHDDRASQDWDVVKAGQMMTAS
PSPGPGPRVAQKPALGRSTSLTEKDLKEAKARSQQIAAQLTTPPSSNSRGVQLFNRRRQR
VNEFTLESHGQRGQKPSQESLRVLPSSLPGHAPGLSLSSTSLPEPGPPRHPSPQSPDRGV
PGHSMEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQQSSPA
PPPAEVHSPAADVNQNLASPSATLTTPTSNSSHNPPATDVNQNPPATVVPQSLPLSSIQQ
NSSEAQLPSNGTGPASKPSTLCADGQPQAPAEEVRCSTLLIDKVSTPATTTSTFSREATL
IPSSRPPASDFMSSSLLIDIQPNTLVVSADQEMSGRAAATTPTKVYSEVHFTLAKPPSVV
NRTARPFGIQAPGGTSQMERSPMLERRHFGEKAPAPQPPSLPDRSPRPQRHIMSRSPMVE
RRMMGQRSPASERRPLGNFTAPPTYTETLSTAPLASWVRSPPSYSVLYPSSDPKSSHLKG
QAVPASKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGEVGV
EEEPFALGAEASNFQQEPAPRDRASPAAAEEVVPEWASCLKSPRIQAKPKPKPNQNLSEA
SGKGAELYARRQSRMEKYVIESSSHTPELARCPSPTMSLPSSWKYPTNAPGAFRVASRSP
ARTPPASLYHGYLPENGVLRPEPTKQPPYQLRPSLFVLSPIKEPAKVSPRAASPAKPSSL
DLVPNLPKGALPPSPALPRPSRSSPGLYTSPGQDSLQPTAVSPPYGGDISPVSPSRAWSP
RAKQAPRPSFSTRNAGIEAQVWKPSFCFK
NT seq 2790 nt   +upstreamnt  +downstreamnt
atgctgggtcctcacctcccacctccgccccttgcacccagcgaagggaggcctaccccc
tgcgccttccagatccctgatggaagctacaggtgtctggctctggaagccgaggagagc
agcggtgaggagggcctgcagggagaggtggggcctaccgacctggaagaggatgagggg
gtcagcaggagtggggacgactctgcctgcagagtcacccaggggacaccgcagctgccc
aaagccctgggcatccaaccacccagctgctccagagaggaacaaggggcgtcccagcac
gacgacagggccagccaggactgggatgtagtgaaggccgggcagatgatgacagccagc
cccagccctggccctgggcccagagtggcccagaaaccagcgttgggccggagcactagc
ctcacggagaaggatctgaaagaagccaaggcgcggagccagcagattgcagcccagctg
accacccctcccagctccaattcccgtggcgtccagctcttcaacaggcgccggcagagg
gtgaacgagttcaccttggagagccacggccagaggggacagaagcccagccaggagtcc
ctcagagtgctcccttcaagcctcccaggccatgcaccggggctcagcctgagttccacc
tcgctgccggagccaggccctccacggcaccccagtccccagagccccgacagaggggtc
cctggccacagcatggaggggtactcagaggaggctagcttgctgcggcacctggagaag
gtggccagtgaggaggaagaggtaccactggtggtttatctaaaggagaatgcagcactg
ctgacagccaatgggctgcacctgtcccaaaaccgagaggcccagcagtcctcaccggcc
ccacctccagctgaggtccacagcccagctgcagatgtcaaccaaaaccttgcctcgccc
agtgccacgctcaccacaccaacttctaacagcagccacaatccgccagccaccgatgtc
aatcagaacccaccggcaactgttgtcccacagagcctgccactttctagcatccaacag
aattcctcagaggcccaactcccatctaatggcacagggcctgcttccaaacccagcacc
ctgtgtgctgatgggcaaccccaggcaccggctgaggaggtgagatgcagcacactccta
attgacaaggtatcaactccagctaccaccaccagcaccttctccagagaagctacgctc
atccccagctccaggcccccagcctcagatttcatgtccagctccctgctcattgacatc
cagcccaacaccctagtggtgtcagcagatcaagagatgtctgggcgagcagctgccacc
acgcccaccaaggtctacagtgaggtccacttcacactggccaagcccccatcagtggtc
aacaggacggccaggccttttgggatccaggcgccagggggcaccagccagatggagagg
agccccatgctagagagacgacattttggggagaaggccccggctccccagccccccagt
ttgccagacaggagcccccggccacagagacacataatgtcccgcagccccatggtggaa
aggaggatgatggggcagcgaagcccggcctcagagagacgccccttggggaacttcact
gcaccccccacctacactgagaccttgtccacagcccctctggcttcctgggtgaggtct
cctccctcatattctgtcctgtatcccagctccgaccccaagtcttctcatctgaagggc
caggcggttcctgccagcaagacgggcattctggaggagtcgatggcccgccggggcagc
cgcaaatccatgtttactttcgtggagaagcccaaggtgaccccgaatccagacttgctg
gatctggtacagacagcggatgagaagcggcggcagagggaccagggggaggtaggcgtg
gaggaggagcccttcgcactgggggccgaggcctccaacttccagcaggagccagcacct
cgtgacagggccagccccgcggcggcggaggaggtggtaccagagtgggcctcctgcctc
aagtcaccccgcatccaggccaagccgaagcccaaacccaaccagaacctctccgaggcc
tctgggaagggagctgagctctacgcccgccgccagtcacggatggagaaatatgtcatc
gagtcttcaagccacacgccagagctggcccgctgcccatcacctaccatgtccctgcct
tcctcctggaaataccccactaacgcccccggggccttccgagtggcatcccgaagccca
gcccggaccccgcctgcctccctctaccatggctacctgcctgagaacggggtcctgcgc
ccagagcccaccaagcagccgccataccagctgcgcccctcgctctttgtcctctcacct
atcaaggagcctgccaaggtctcaccaagagctgcctcgcccgccaagcccagctccttg
gacctggtgcccaacctgcccaagggggctctccctccatctcctgccctgcctcggccc
tcgcgctcctcaccgggcctctacacctcccccggccaggacagcctgcagcccactgcc
gtgagccctccttacggcggtgacatctcccccgtgtctccctccagggcgtggtctccc
cgagccaagcaggcccccaggccctccttctctacccggaacgccgggatcgaggctcag
gtgtggaagccttccttctgcttcaagtaa

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Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (26)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (24)   
DNA sequence (68)   
   RefSeq(nuc) (24)   
   GenBank (22)   
   EMBL (22)   
Protein domain (1)   
   Pfam (1)   
All databases (122)   

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