KEGG   Homo sapiens (human): 140886
Entry
140886            CDS       T01001                                 
Symbol
PABPC5, PABP5
Name
(RefSeq) poly(A) binding protein cytoplasmic 5
  KO
K13126  polyadenylate-binding protein
Organism
hsa  Homo sapiens (human)
Pathway
hsa03015  mRNA surveillance pathway
hsa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    140886 (PABPC5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140886 (PABPC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    140886 (PABPC5)
   03041 Spliceosome [BR:hsa03041]
    140886 (PABPC5)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     140886 (PABPC5)
   mRNA cycle factors
    Stress granule specific factors
     140886 (PABPC5)
Spliceosome [BR:hsa03041]
 Complex C
  Other components
   Complex C specific factors
    140886 (PABPC5)
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_occluded RRM_7 RRM_3 TC1
Other DBs
NCBI-GeneID: 140886
NCBI-ProteinID: NP_543022
OMIM: 300407
HGNC: 13629
Ensembl: ENSG00000174740
UniProt: Q96DU9
Position
X:91434839..91438584
AA seq 382 aa
MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG
FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE
MNGRIVGSKPLHVTLGQARRRC
NT seq 1149 nt   +upstreamnt  +downstreamnt
atggggagcggggagcctaatcctgctggcaagaaaaagaagtatctcaaggccgctctg
tacgtgggtgacttggacccagatgtcaccgaggacatgctctataagaagttcaggcct
gctggccctctgcgattcacccgaatctgccgtgatccggtgacccgcagccccctgggc
tatgggtatgttaacttccgctttcccgcggatgcagagtgggccttgaacaccatgaat
tttgatttgattaatggaaaaccattccgccttatgtggtctcagccagatgaccgctta
agaaagtctggagtgggaaatatattcatcaaaaacctggacaaatccatagacaatagg
gccctgttttacttattttctgcttttgggaacattctgtcctgcaaagtcgtatgcgat
gacaacggctctaagggttatgcctatgttcactttgacagcctggccgctgccaataga
gccatctggcacatgaatggagtgcggctcaacaaccgccaggtgtatgttggcagattc
aaattcccagaagagcgggcggctgaggtcagaaccagggatagagcaactttcaccaat
gttttcgttaaaaacattggagacgacatagatgacgaaaaactgaaggaacttttctgt
gaatatgggccaactgagagtgttaaagtaataagagatgccagtgggaaatctaaaggc
tttggatttgtgagatatgagacacacgaggctgcccaaaaggctgtgctagacttgcat
ggaaagtccatcgatggaaaagtcctctatgtagggcgagcacagaagaaaattgaacgc
ctggctgagttgaggcggagatttgaacggctgaggttaaaagaaaaaagtcggccccca
ggggtgcctatctatattaagaacttggatgagacaatcaatgatgaaaaactgaaggag
gaattttcttcctttgggtcaattagtcgggccaaagtgatgatggaagtggggcaaggc
aaaggatttggtgtggtctgcttttcctcttttgaagaggctaccaaagcagtggatgag
atgaatggccgcatagtgggctccaagcccctgcatgtcaccctgggccaggccaggcgc
aggtgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (6)   
   Pfam (6)   
All databases (34)   

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