KEGG   Homo sapiens (human): 23658
Entry
23658             CDS       T01001                                 
Symbol
LSM5, YER146W
Name
(RefSeq) LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
hsa  Homo sapiens (human)
Pathway
hsa03018  RNA degradation
hsa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    23658 (LSM5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    23658 (LSM5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    23658 (LSM5)
   03041 Spliceosome [BR:hsa03041]
    23658 (LSM5)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     23658 (LSM5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     23658 (LSM5)
Spliceosome [BR:hsa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    23658 (LSM5)
SSDB
Motif
Pfam: LSM SM-ATX LSM14
Other DBs
NCBI-GeneID: 23658
NCBI-ProteinID: NP_036454
OMIM: 607285
HGNC: 17162
Ensembl: ENSG00000106355
UniProt: Q9Y4Y9 A0A090N8Y5
Structure
Position
7:complement(32485338..32495283)
AA seq 91 aa
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcggctaacgctactaccaacccgtcgcagctgctgcccttagagcttgtggacaaa
tgtataggatcaagaattcacatcgtgatgaagagtgataaggaaattgttggtactctt
ctaggatttgatgactttgtcaatatggtactggaagatgtcactgagtttgaaatcaca
ccagaaggaagaaggattactaaattagatcagattttgctaaatggaaataatataaca
atgctggttcctggaggagaaggacctgaagtgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (5)   
   OC (1)   
Protein sequence (8)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (28)   
   RefSeq(nuc) (6)   
   GenBank (11)   
   EMBL (11)   
3D Structure (7)   
   PDB (7)   
Protein domain (3)   
   Pfam (3)   
All databases (94)   

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