KEGG   Homo sapiens (human): 26024
Entry
26024             CDS       T01001                                 
Symbol
PTCD1
Name
(RefSeq) pentatricopeptide repeat domain 1
  KO
K17710  pentatricopeptide repeat domain-containing protein 1
Organism
hsa  Homo sapiens (human)
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hsa03016]
    26024 (PTCD1)
   03029 Mitochondrial biogenesis [BR:hsa03029]
    26024 (PTCD1)
Transfer RNA biogenesis [BR:hsa03016]
 Eukaryotic type
  3'processing and CCA adding factors
   3'processing factors
    26024 (PTCD1)
Mitochondrial biogenesis [BR:hsa03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    26024 (PTCD1)
SSDB
Motif
Pfam: PPR_2 PPR_3 PPR_long PPR PPR_1 MNE1
Other DBs
NCBI-GeneID: 26024
NCBI-ProteinID: NP_056360
OMIM: 614774
HGNC: 22198
Ensembl: ENSG00000106246
UniProt: O75127 A4D273
Position
7:complement(99416739..99438798)
AA seq 700 aa
MDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWAPFSSSSSQLPLGQERQ
ENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLFRKSAAQFHNLRFGERRDE
QMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFERQMLKEERLQPMESNYTVLI
GGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQA
KNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLLMGCIQDKKTGF
RYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGLGDPQVASELLLKPREEATVLQPPVSR
QRPRRTAQAKAGNLMSAMLHVEALERQLFLEPSQALGPPEPPEARVPGKAQPEVDTKAEP
SHTAALTAVALKPPPVELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAE
HRQQPDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAK
ALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRK
LNYTYLISILKDMKQNRVPVNEVVIRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQ
WLTVMPAEETPHPWQKFRTKPQGDQDTGKEADDGCALGGR
NT seq 2103 nt   +upstreamnt  +downstreamnt
atggacttcgtgagactcgctcgactgttcgccagggcccgccccatgggactgttcatc
ctgcaacacctggacccctgtagagccaggtgggcaggaggcagggaggggctgatgcgg
ccaatgtgggcgcccttcagcagctcctcctctcagctgcccctcggccaggagcgtcag
gaaaacacgggcagcctgggctctgacccgagccactccaactccacggccacgcaggaa
gaagacgaggaggaggaggagagttttgggaccctctctgacaaatactcctcccggaga
ctattccgcaaatccgcagcccagttccataacctgcggtttggggaacggagagatgag
caaatggaaccggagcccaaattatggcgaggccggagaaacaccccgtactggtacttc
ttgcagtgcaaacacctgatcaaggaagggaagctggttgaagccctggacctgtttgag
aggcagatgctgaaggaggagcgattgcagcccatggagagcaactacacggtgctgatt
gggggctgcgggcgggttggctacctgaagaaggccttcaacctctacaaccagatgaaa
aagcgggacctggagccctcggacgccacctacacggccctgttcaacgtctgtgccgag
tccccctggaaggactcagctctacagagcgccctgaagctccggcagcagctgcaggcc
aaaaacttcgagctcaacttgaaaacataccacgcgctgctgaagatggctgccaagtgc
gcagaccttaggatgtgcctcgatgtgttcaaggaaatcatccacaaagggcacgtggtc
acagaggagaccttcagtttcctgctcatgggctgcatccaagacaagaagacaggcttc
cggtacgccctccaggtgtggcggctgatgctgagtctagggctacagccgagccgggac
agctacaacctgctgttggtggcagctcgggactgtggcctaggggacccccaggtggcc
tcagagctgcttctgaagcccagggaggaggcgactgtgcttcagcccccagtgagcagg
cagcggccaaggaggacagcccaggccaaggcaggcaacctcatgtcagccatgctgcat
gtggaggccctggagaggcagctgtttctggaaccttctcaggcacttgggcctccagag
cctccggaagccagagtgcccggcaaggcccaaccagaggtggatactaaggcagagccc
agccacacagcagccctcaccgcagtggccctgaagccacctcccgtggagctggaagtc
aacctcctgacccccggggccgttccccctacagtggtctcctttggaacggtgaccacc
ccagctgaccggctggccttgatagggggcctggagggcttcctgagcaagatggcagag
cacaggcagcagcccgacatcaggaccctcacgctactggccgaggtggtggagtccggg
agtcctgcagagtccttgctgctggccctcctggatgagcaccaggtagaggccgacctg
acattctttaacacgctggtgagaaagaagagcaagctgggagacctggagggggccaag
gcgctgttgccggtcctggcaaagaggggcctcgtccccaacctgcagacattctgcaac
ctggccatcgggtgccacaggccgaaggacggtctacagcttctcacagacatgaagaag
tcccaggtgacccccaacactcacatctacagtgccctcatcaacgcggccatcaggaag
ctgaactacacctatctcatcagcatcttgaaggacatgaagcagaacagggtcccggtg
aacgaagtggtcatccgccagctggagtttgcagcccagtaccctcccacctttgaccgg
taccaagggaagaacacctacctggagaagattgacggcttccgagcctattacaagcag
tggctgacagtgatgcccgcagaggaaaccccgcacccctggcagaagttccggaccaag
ccccagggggaccaggacaccggcaaggaggctgatgacggatgtgcccttgggggcagg
tga

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Ontology (3)   
   KEGG BRITE (3)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (11)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (25)   
   RefSeq(nuc) (1)   
   GenBank (12)   
   EMBL (12)   
Protein domain (6)   
   Pfam (6)   
All databases (65)   

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