KEGG   Homo sapiens (human): 27257
Entry
27257             CDS       T01001                                 
Symbol
LSM1, CASM, YJL124C
Name
(RefSeq) LSM1 homolog, mRNA degradation associated
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
hsa  Homo sapiens (human)
Pathway
hsa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    27257 (LSM1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    27257 (LSM1)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     27257 (LSM1)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     27257 (LSM1)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 27257
NCBI-ProteinID: NP_055277
OMIM: 607281
HGNC: 20472
Ensembl: ENSG00000175324
UniProt: O15116 A0A0S2Z590
Position
8:complement(38163321..38176730)
AA seq 133 aa
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDR
GLSIPRADTLDEY
NT seq 402 nt   +upstreamnt  +downstreamnt
atgaactatatgcctggcaccgccagcctcatcgaggacattgacaaaaagcacttggtt
ctgcttcgagatggaaggacacttataggctttttaagaagcattgatcaatttgcaaac
ttagtgctacatcagactgtggagcgtattcatgtgggcaaaaaatacggtgatattcct
cgagggatttttgtggtcagaggagaaaatgtggtcctactaggagaaatagacttggaa
aaggagagtgacacacccctccagcaagtatccattgaagaaattctagaagaacaaagg
gtggaacagcagaccaagctggaagcagagaagttgaaagtgcaggccctgaaggaccga
ggtctttccattcctcgagcagatactcttgatgagtactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (5)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (25)   
   RefSeq(nuc) (3)   
   GenBank (11)   
   EMBL (11)   
Protein domain (1)   
   Pfam (1)   
All databases (50)   

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