KEGG   Homo sapiens (human): 27258
Entry
27258             CDS       T01001                                 
Symbol
LSM3, SMX4, USS2, YLR438C
Name
(RefSeq) LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
hsa  Homo sapiens (human)
Pathway
hsa03018  RNA degradation
hsa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    27258 (LSM3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    27258 (LSM3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    27258 (LSM3)
   03041 Spliceosome [BR:hsa03041]
    27258 (LSM3)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     27258 (LSM3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     27258 (LSM3)
Spliceosome [BR:hsa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    27258 (LSM3)
 Complex C
  U2 snRNP components
    27258 (LSM3)
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E DUF150_C
Other DBs
NCBI-GeneID: 27258
NCBI-ProteinID: NP_055278
OMIM: 607283
HGNC: 17874
Ensembl: ENSG00000170860
UniProt: P62310
Structure
Position
3:14178817..14201122
AA seq 102 aa
MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggacgacgtagaccagcaacaaactaccaacactgtagaggagcccctggatctt
atcaggctcagcctagatgagcgaatttatgtgaaaatgagaaatgaccgagagcttcga
ggcagattacatgcttatgatcaacatttaaatatgatcttgggagatgtggaagaaact
gtgactactatagaaattgatgaagaaacatatgaagagatatataaatcaacgaaacgg
aatattccaatgctctttgtccggggagatggcgttgtcctggttgcccctccactgaga
gttggctga

DBGET integrated database retrieval system