KEGG   Homo sapiens (human): 339
Entry
339               CDS       T01001                                 
Symbol
APOBEC1, APO1, APOBEC-1, BEDP, CDAR1, HEPR
Name
(RefSeq) apolipoprotein B mRNA editing enzyme catalytic subunit 1
  KO
K16932  C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
Organism
hsa  Homo sapiens (human)
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    339 (APOBEC1)
Enzymes [BR:hsa01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.36  mRNA(cytosine6666) deaminase
     339 (APOBEC1)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    APOBEC1-ACF complex
     339 (APOBEC1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     339 (APOBEC1)
SSDB
Motif
Pfam: APOBEC4_like APOBEC1 NAD1 SNAD4 APOBEC2 APOBEC_N NAD2 APOBEC4 APOBEC3 APOBEC_C dCMP_cyt_deam_1 Bd3614-deam Toxin-deaminase
Other DBs
NCBI-GeneID: 339
NCBI-ProteinID: NP_001291495
OMIM: 600130
HGNC: 604
Ensembl: ENSG00000111701
UniProt: P41238
Structure
Position
12:complement(7649400..7670599)
AA seq 236 aa
MTSEKGPSTGDPTLRRRIEPWEFDVFYDPRELRKEACLLYEIKWGMSRKIWRSSGKNTTN
HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLF
WHMDQQNRQGLRDLVNSGVTIQIMRASEYYHCWRNFVNYPPGDEAHWPQYPPLWMMLYAL
ELHCIILSLPPCLKISRRWQNHLTFFRLHLQNCHYQTIPPHILLATGLIHPSVAWR
NT seq 711 nt   +upstreamnt  +downstreamnt
atgacttctgagaaaggtccttcaaccggtgaccccactctgaggagaagaatcgaaccc
tgggagtttgacgtcttctatgaccccagagaacttcgtaaagaggcctgtctgctctac
gaaatcaagtggggcatgagccggaagatctggcgaagctcaggcaaaaacaccaccaat
cacgtggaagttaattttataaaaaaatttacgtcagaaagagattttcacccatccatg
agctgctccatcacctggttcttgtcctggagtccctgctgggaatgctcccaggctatt
agagagtttctgagtcggcaccctggtgtgactctagtgatctacgtagctcggcttttt
tggcacatggatcaacaaaatcggcaaggtctcagggaccttgttaacagtggagtaact
attcagattatgagagcatcagagtattatcactgctggaggaattttgtcaactaccca
cctggggatgaagctcactggccacaatacccacctctgtggatgatgttgtacgcactg
gagctgcactgcataattctaagtcttccaccctgtttaaagatttcaagaagatggcaa
aatcatcttacatttttcagacttcatcttcaaaactgccattaccaaacgattccgcca
cacatccttttagctacagggctgatacatccttctgtggcttggagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Disease (1)   
   OMIM (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (35)   
   RefSeq(nuc) (3)   
   GenBank (16)   
   EMBL (16)   
3D Structure (1)   
   PDB (1)   
Protein domain (13)   
   Pfam (13)   
All databases (74)   

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