KEGG   Homo sapiens (human): 51340
Entry
51340             CDS       T01001                                 
Symbol
CRNKL1, CLF, CRN, Clf1, HCRN, MSTP021, SYF3
Name
(RefSeq) crooked neck pre-mRNA splicing factor 1
  KO
K12869  crooked neck
Organism
hsa  Homo sapiens (human)
Pathway
hsa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    51340 (CRNKL1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hsa03041]
    51340 (CRNKL1)
   03036 Chromosome and associated proteins [BR:hsa03036]
    51340 (CRNKL1)
Spliceosome [BR:hsa03041]
 Complex B
  Other components
   Prp19-related factors
    51340 (CRNKL1)
 Complex C
    51340 (CRNKL1)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Other centrosome duplication proteins
     51340 (CRNKL1)
SSDB
Motif
Pfam: HAT TPR_14 TPR_19 Suf TPR_17 NRDE-2 Mad3_BUB1_I U3_assoc_6
Other DBs
NCBI-GeneID: 51340
NCBI-ProteinID: NP_057736
OMIM: 610952
HGNC: 15762
Ensembl: ENSG00000101343
UniProt: Q9BZJ0 Q69YP1
Structure
Position
20:complement(20034368..20056046)
AA seq 848 aa
MTATVENLTFQKDTLGNAVDKNTSRLELRSYSLAGRHGSTEPLVLAWSSQFRRLTWGCAL
DALHRSPCVAASQHGVTHLIRSSRTPHSTRCRKEDAQPGHHGNGAASVTAQARGQRSVLQ
VPLPVPRSCLFSESFVVSVSSQSRFLASVPGTGVQRSTAADMAASTAAGKQRIPKVAKVK
NKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNIRKNRT
VISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWD
RAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVD
RARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFA
KFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQY
EEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINY
ALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSI
GKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRAR
AIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFEL
SSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVDKLMPE
KVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPNLKLLAMAKLWKKQQQEKEDAEHHPD
EDVDESES
NT seq 2547 nt   +upstreamnt  +downstreamnt
atgacggcaacagtggagaacctaacgttccagaaggacactttgggaaatgctgttgac
aaaaacacatccagattggagctccgttcttactcccttgcagggcgccacggctcgaca
gagccactcgtcctcgcctggtcatcccagttccggaggctgacctggggatgcgccctg
gacgccctgcaccgcagtccttgcgtcgctgctagtcagcacggcgttacccacctcatc
cgcagctccaggacgccgcactccacgcgctgccgcaaggaggacgcgcagcctggtcac
catggaaacggtgccgcctccgtcacggctcaagcgagaggtcaaaggtcagtcctgcaa
gttccgcttccggttccgagatcctgtttgttttctgaaagctttgtggtttcggtgagc
tctcagagccgatttctagcgtccgtgccggggacaggtgtccagaggtcgactgctgca
gacatggcggcctccaccgcggccgggaagcagcggattcccaaagtggccaaggtgaaa
aacaaagccccggctgaggtacagataactgctgaacaactcttaagagaggctaaagaa
agagaacttgagcttcttccacctccacctcaacagaagatcacagatgaagaagaatta
aatgattataaactaaggaaaaggaagacttttgaagataatataagaaaaaacaggact
gtgattagtaactggataaaatacgcacaatgggaagaaagcctaaaggagattcaaagg
gctcgatccatatacgagcgtgctttagatgtagactaccgaaatattacactctggctg
aaatacgcagaaatggaaatgaagaatcgccaagtcaaccatgctcgaaatatctgggac
cgggccataacaacgctgcctcgagttaatcagttctggtacaagtacacgtacatggag
gaaatgttgggaaacgttgccggtgcccggcaggtgtttgagcgctggatggagtggcag
cctgaggagcaagcctggcactcctacatcaactttgagctgagatacaaagaggtggat
cgggcccgcaccatttatgagcgatttgtcctcgtgcaccctgatgttaagaactggatc
aagtatgcccgctttgaagaaaaacatgcttattttgcccatgcacggaaagtgtatgag
agagctgtggaattctttggagatgaacatatggatgagcacctttatgttgcctttgcc
aagtttgaagaaaatcagaaagagtttgaaagggtacgagtgatttacaagtatgccctg
gacagaatttcaaaacaagatgcccaagaactctttaaaaattataccatctttgagaag
aagtttggtgataggcggggtattgaagatatcattgtgagcaaacggagattccagtac
gaagaagaagtgaaggcgaatccacacaattatgatgcatggtttgattacttgcgcttg
gtagaaagtgacgcagaagctgaagccgtgagagaagtctatgaaagggccattgccaat
gtcccacccattcaggagaagaggcactggaagcgctacatttatctttggatcaactat
gcactctatgaagaattggaggcaaaggatcctgagaggacaagacaggtgtatcaagcc
tctttggaactaattcctcacaaaaagttcacatttgccaaaatgtggatactgtatgca
cagtttgaaatacgacagaagaatctgtcattagccagaagagcattgggaacttccata
ggcaaatgtccaaagaacaaattatttaaagtttacatagaattggagctacagcttcga
gaatttgacagatgccggaagctttatgaaaagttcctggaatttggacctgaaaattgt
acctcatggattaaattcgctgaattagagacaatccttggtgatattgacagagcacgg
gcaatctatgaattagccatcagtcagccacgtttagacatgccagaggtgctttggaaa
tcatatattgattttgaaattgagcaggaagaaacagaaagaacacgaaacctttaccgg
cggttgcttcaacggacgcagcatgtcaaggtatggatcagctttgctcagtttgagttg
tcttcaggaaaagaaggaagtttgactaaatgcagacaaatttatgaagaagctaacaaa
accatgcgaaactgtgaagaaaaggaagagagacttatgctgctggaatcttggcgaagt
tttgaagaagaatttggaacagcttcagataaggagagagtagacaaactcatgccagag
aaagtcaagaagagaagaaaggtccagactgatgatgggtctgatgcaggctgggaagaa
tactttgattacatctttccagaagatgctgccaaccaacctaacctcaaactcctggcc
atggccaaactgtggaagaaacagcagcaggaaaaggaggatgctgagcaccatccagat
gaggacgtcgatgagagtgaatcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (10)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (41)   
   RefSeq(nuc) (7)   
   GenBank (17)   
   EMBL (17)   
3D Structure (22)   
   PDB (22)   
Protein domain (8)   
   Pfam (8)   
All databases (125)   

Download RDF
DBGET integrated database retrieval system