KEGG   Homo sapiens (human): 5439
Entry
5439              CDS       T01001                                 
Symbol
POLR2J, POLR2J1, RPB11, RPB11A, RPB11m, hRPB14
Name
(RefSeq) RNA polymerase II subunit J
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
hsa  Homo sapiens (human)
Pathway
hsa03020  RNA polymerase
hsa03420  Nucleotide excision repair
hsa05016  Huntington disease
Network
nt06502  Nucleotide excision repair
  Element
N01430  Transcription-coupled NER
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    5439 (POLR2J)
  09124 Replication and repair
   03420 Nucleotide excision repair
    5439 (POLR2J)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    5439 (POLR2J)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsa03021]
    5439 (POLR2J)
   03400 DNA repair and recombination proteins [BR:hsa03400]
    5439 (POLR2J)
Transcription machinery [BR:hsa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     5439 (POLR2J)
DNA repair and recombination proteins [BR:hsa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      5439 (POLR2J)
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L SHNi-TPR
Other DBs
NCBI-GeneID: 5439
NCBI-ProteinID: NP_006225
OMIM: 604150
HGNC: 9197
Ensembl: ENSG00000005075
UniProt: P52435
Structure
Position
7:complement(102473128..102478922)
AA seq 117 aa
MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
NT seq 354 nt   +upstreamnt  +downstreamnt
atgaacgcccctccagccttcgagtcgttcttgctcttcgagggcgagaagaagatcacc
attaacaaggacaccaaggtacccaatgcctgtttattcaccatcaacaaagaagaccac
acactgggaaacatcattaaatcacaactcctaaaagacccgcaagtgctatttgctggc
tacaaagtcccccaccccttggagcacaagatcatcatccgagtgcagaccacgccggac
tacagcccccaggaagcctttaccaacgccatcaccgacctcatcagtgagctgtccctg
ctggaggagcgctttcgggtggccataaaagacaagcaggaaggaattgagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Network (2)   
   KEGG NETWORK (2)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (56)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (15)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (28)   
   RefSeq(nuc) (6)   
   GenBank (11)   
   EMBL (11)   
3D Structure (12)   
   PDB (12)   
Protein domain (3)   
   Pfam (3)   
All databases (116)   

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