KEGG   Homo sapiens (human): 56135
Entry
56135             CDS       T01001                                 
Symbol
PCDHAC1, PCDH-ALPHA-C1
Name
(RefSeq) protocadherin alpha subfamily C, 1
  KO
K16493  protocadherin alpha
Organism
hsa  Homo sapiens (human)
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hsa03036]
    56135 (PCDHAC1)
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:hsa04515]
    56135 (PCDHAC1)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Centrosome formation proteins
   Other centriole associated proteins
    56135 (PCDHAC1)
Cell adhesion molecules [BR:hsa04515]
 Cadherins
  Protocadherins
   56135 (PCDHAC1)
SSDB
Motif
Pfam: Cadherin_tail Cadherin Cadherin_2 Cadherin_C_2 DUF5527
Other DBs
NCBI-GeneID: 56135
NCBI-ProteinID: NP_061721
OMIM: 606320
HGNC: 8676
Ensembl: ENSG00000248383
UniProt: Q9H158
Position
5:140926299..141012347
AA seq 963 aa
MVGCGVAVLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSS
HRELYFGVDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDN
SPLFPAGDVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGS
EYPELVLEKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRT
KVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLG
PPETLLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIA
LFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDS
GSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLV
SYELLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVT
INLFVVDRNDNYPVILFPLPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHI
SRASDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSV
PQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLLFFVCTKLHQSPGCCAQSCCR
STEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGEYNAADL
RNLATGVGLNLPISCIQIRNRKGDHANVNAMPRQPNPDWRYSASLRAGMHSSVHLEEAGI
LRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDK
FIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDN
SDQ
NT seq 2892 nt   +upstreamnt  +downstreamnt
atggtgggctgtggggtggcagttttatgtttgtgggtttcctgcggcgctgcagcggga
cagctcgagtactcagtgccggaggagacggagcggggcgtagccgtaggcaatctctcc
gcggacttgaggctgccagcggccgctatgtcctcgcggaactttcgcttcctttccagc
caccgcgagctctacttcggggtggatctacccagcggcaatttggtggtcagagagccg
gcggaccgcgaacagctgtgcagggccaaagctgcctgcgtcttgacctacgacctggtg
ctcgaggacccgctggagctgcacaagattcggattcacgtcctggacaccaatgacaac
tcacctctctttcctgccggcgacgtgcagctgcacatccccgagttcctgacgcccgga
gcccgctttactctcccgaatgcccaagatgacgacgagggaagcaatgggatactaagc
tacagcctaagccccagtcagcactttcgcctggacatgggatcgcgggttgacggcagc
gaatacccggagttggtgttggagaaagcactggatcgcgaacagcgcgccacccacctg
ctggtgcttacagctcgggacggcgggctacctgcccgctcaggagacgcacaagtcacc
atcattgtggtggacacaaatgacaacgcgcctgtatttgagcgctccgtataccgcacc
aaggttccagagactgcacccaatgggactgtgttattccgagttcaagccttggatcca
gatgaagggtccaatggggaagtccagtactccctaagcaacagcacgcaagcagagctg
cgacaccgctttcacgtgcaccctaaaagtggggaggtgcaagtagctgcttcactaggt
ccgcctgaaacgctcttggaggcatacattgaggcgagggacgaaggtgtctttggttta
gctagcaccgctaaactgctggtggaggtgactgacgtgaacgatcatgcccccgaactg
gacttcctgactctttcgaacccagtacctgaggacgctgcccctggcacagtgattgct
ctctttagtgtaaaggatgaagacctcgattctaatggtagggtcatttgtggcatgtct
agtgcaggcccttttcagctgacggcttcctttgacaactactacagcctgctgattgat
gggcccctggaccgggagcagatcagtgaataccaagtcctgatcacggcctcagatagt
ggctcacccccacttagcacccgaaggacaatcactgtgtcagttgctgatgtgaatgac
aatacaccaaactttcctcaaccccagcaggaacttttcgttgctgaaaacaatggccct
ggggcctctctaggccgagtgtttgcccaggaccccgacctggggaagaatggccttgtc
tcttatgagctgttggatgttatctctgaagggccatcagcctctagcttgctggcagtg
gaatcatccagtggggccatcactgccaaaacttcctttgactttgagcagctcaggggg
tttcatttccaagtagaaggccgggatggtggcattcctcccagaagtgcaacagtgact
ataaacttgtttgtggtagataggaatgacaattatccggttatcttgtttcccttgccc
agaaatggttctgtcccagtggaaattgtgccccgctctgccaggactggacacttggtc
acaaaagtggtagcagaggatgctgacagtggttctaatgcctggctttcctaccacatc
tcccgggcgtctgactctagtctctttagaatttcagccaatataggtgagctccgtact
gctcgcttagttcttcccactgatgcagttaagcagagggtggtggtagtggttcgggac
catggagacccaccactttcctcctctgtcactctgggtgtgctgttgagcaactctgtc
cctcagttacttccagactttgaagatgtctgggaaccaggagggcagctttctgcccag
aacttgtatttagtaattgccttggcttgtatttcctttttatttctggggtgcttactt
ttcttcgtgtgtaccaagttgcaccagagcccaggctgttgcgctcagagctgctgtcgc
tctacagaggatctgaggtatggaagtaagatggtttcaaatccttgcatgacatcagcc
accatagatgtcactacagttgagagactttctcagacttatctctatcgggcctctctg
ggacttggttctgataataacagtttgctgttgcgtggggagtacaatgctgccgacctg
cgaaatcttgccactggggtaggactgaatttgccaatatcctgtattcagattcggaat
aggaaaggggatcacgctaatgtcaatgccatgccacgacagcccaaccctgactggcgt
tactctgcctccctgagagcaggcatgcacagctctgtgcacctagaggaggctggcatt
ctacgggctggtccaggagggcctgatcagcagtggccaacagtatccagtgcaacacca
gaaccagaggcaggagaagtgtcccctccagtcggtgcgggtgtcaacagcaacagctgg
acctttaaatacggaccaggcaaccccaaacaatccggtcccggtgagttgcccgacaaa
ttcattatcccaggatctcctgcaatcatctccatccggcaggagcctactaacagccaa
attgacaaaagtgacttcataaccttcggcaaaaaggaggagaccaagaaaaagaagaaa
aagaagaagggtaacaagacccaggagaaaaaagagaaagggaacagcacgactgacaac
agtgaccagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (18)   
   RefSeq(nuc) (2)   
   GenBank (8)   
   EMBL (8)   
Protein domain (5)   
   Pfam (5)   
All databases (51)   

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