KEGG   Homo sapiens (human): 56979
Entry
56979             CDS       T01001                                 
Symbol
PRDM9, KMT8B, MEISETZ, MSBP3, PFM6, ZNF899
Name
(RefSeq) PR/SET domain 9
  KO
K20796  [histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:2.1.1.354]
Organism
hsa  Homo sapiens (human)
Pathway
hsa00310  Lysine degradation
hsa01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00310 Lysine degradation
    56979 (PRDM9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hsa03000]
    56979 (PRDM9)
   03036 Chromosome and associated proteins [BR:hsa03036]
    56979 (PRDM9)
Enzymes [BR:hsa01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.354  [histone H3]-lysine4 N-trimethyltransferase
     56979 (PRDM9)
Transcription factors [BR:hsa03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 PRDM
    56979 (PRDM9)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Meiosis-specific proteins
   DSB formation-related proteins
    56979 (PRDM9)
  Histone modification proteins
   HMTs (histone methyltransferases)
    HKMTs (histone lysine methyltransferases)
     56979 (PRDM9)
SSDB
Motif
Pfam: zf-H2C2_2 zf-C2H2 PRDM2_PR zf-C2H2_4 zf-C2H2_jaz SSXRD zf-C2H2_5 zf-C2H2_6 SET KRAB Zn-ribbon_8 zf-met zf_PR_Knuckle Phage_F
Other DBs
NCBI-GeneID: 56979
NCBI-ProteinID: NP_001297143
OMIM: 609760
HGNC: 13994
Ensembl: ENSG00000164256
UniProt: Q9NQV7
Structure
Position
5:23507155..23528093
AA seq 894 aa
MSPEKSQEESPEEDTERTERKPMVKDAFKDISIYFTKEEWAEMGDWEKTRYRNVKRNYNA
LITIGLRATRPAFMCHRRQAIKLQVDDTEDSDEEWTPRQQVKPPWMALRVEQRKHQKGMP
KASFSNESSLKELSRTANLLNASGSEQAQKPVSPSGEASTSGQHSRLKLELRKKETERKM
YSLRERKGHAYKEVSEPQDDDYLYCEMCQNFFIDSCAAHGPPTFVKDSAVDKGHPNRSAL
SLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANNGYSWLITKGRN
CYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVWYGDE
YGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQNFPGPS
ARKLLQPENPCPGDQNQEQQYPDPHSRNDKTKGQEIKERSKLLNKRTWQREISRAFSSPP
KGQMGSCRVGKRIMEEESRTGQKVNPGNTGKLFVGVGISRIAKVKYGECGQGFSVKSDVI
THQRTHTGEKLYVCRECGRGFSWKSHLLIHQRIHTGEKPYVCRECGRGFSWQSVLLTHQR
THTGEKPYVCRECGRGFSRQSVLLTHQRRHTGEKPYVCRECGRGFSRQSVLLTHQRRHTG
EKPYVCRECGRGFSWQSVLLSHQRTHTGEKPYVCRECGRGFSWQSVLLTHQRTHTGEKPY
VCRECGRGFSNKSHLLRHQRTHTGEKPYVCRECGRGFRDKSHLLRHQRTHTGEKPYVCRE
CGRGFRDKSNLLSHQRTHTGEKPYVCRECGRGFSNKSHLLRHQRTHTGEKPYVCRECGRG
FRNKSHLLRHQRTHTGEKPYVCRECGRGFSDRSSLCYHQRTHTGEKPYVCREDE
NT seq 2685 nt   +upstreamnt  +downstreamnt
atgagccctgaaaagtcccaagaggagagcccagaagaagacacagagagaacagagcgg
aagcccatggtcaaagatgccttcaaagacatttccatatacttcaccaaggaagaatgg
gcagagatgggagactgggagaaaactcgctataggaatgtgaaaaggaactataatgca
ctgattactataggtctcagagccactcgaccagctttcatgtgtcaccgaaggcaggcc
atcaaactccaggtggatgacacagaagattctgatgaagaatggacccctaggcagcaa
gtcaaacctccttggatggccttaagagtggaacagcgtaaacaccagaagggaatgccc
aaggcgtcattcagtaatgaatctagtttgaaagaattgtcaagaacagcaaatttactg
aatgcaagtggctcagagcaggctcagaaaccagtgtccccttctggagaagcaagtacc
tctggacagcactcaagactaaaactggaactcaggaagaaggagactgaaagaaagatg
tatagcctgcgagaaagaaagggtcatgcatacaaagaggtcagcgagccgcaggatgat
gattacctctattgtgagatgtgtcagaacttcttcattgacagctgtgctgcccatggg
ccccctacatttgtaaaggacagtgcagtggacaaggggcaccccaaccgttcagccctc
agtctgcccccagggctgagaattgggccatcaggcatccctcaggctgggcttggagta
tggaatgaggcatctgatctgccgctgggtctgcactttggcccttatgagggccgaatt
acagaagacgaagaggcagccaacaatggatactcctggctgatcaccaaggggagaaac
tgctatgagtatgtggatggaaaagataaatcctgggccaactggatgaggtatgtgaac
tgtgcccgggatgatgaagagcagaacctggtggccttccagtaccacaggcagatcttc
tatagaacctgccgagtcattaggccaggctgtgaactgctggtctggtatggggatgaa
tacggccaggaactgggcatcaagtggggcagcaagtggaagaaagagctcatggcaggg
agagaaccaaagccagagatccatccatgtccctcatgctgtctggccttttcaagtcag
aaatttctcagtcaacatgtagaacgcaatcactcctctcagaacttcccaggaccatct
gcaagaaaactcctccaaccagagaatccctgcccaggggatcagaatcaggagcagcaa
tatccagatccacacagccgtaatgacaaaaccaaaggtcaagagatcaaagaaaggtcc
aaactcttgaataaaaggacatggcagagggagatttcaagggccttttctagcccaccc
aaaggacaaatggggagctgtagagtgggaaaaagaataatggaagaagagtccagaaca
ggccagaaagtgaatccagggaacacaggcaaattatttgtgggggtaggaatctcaaga
attgcaaaagtcaagtatggagagtgtggacaaggtttcagtgttaaatcagatgttatt
acacaccaaaggacacatacaggggagaagctctacgtctgcagggagtgtgggcggggc
tttagctggaagtcacacctcctcattcaccagaggatacacacaggggagaagccctat
gtctgcagggagtgtgggcggggctttagctggcagtcagtcctcctcactcaccagagg
acacacacaggggagaagccctatgtctgcagggagtgtgggcggggctttagccggcag
tcagtcctcctcactcaccagaggagacacacaggggagaagccctatgtctgcagggag
tgtgggcggggctttagccggcagtcagtcctcctcactcaccagaggagacacacaggg
gagaagccctatgtctgcagggagtgtgggcggggctttagctggcagtcagtcctcctc
agtcaccagaggacacacacaggggagaagccctatgtctgcagggagtgtgggcggggc
tttagctggcagtcagtcctcctcactcaccagaggacacacacaggggagaagccctat
gtctgcagggagtgtgggcggggctttagcaataagtcacacctcctcagacaccagagg
acacacacaggggagaagccctatgtctgcagggagtgtgggcggggctttcgcgataag
tcacacctcctcagacaccagaggacacacacaggggagaagccctatgtctgcagggag
tgtgggcggggctttagagataagtcaaacctcctcagtcaccagaggacacacacaggg
gagaagccctatgtctgcagggagtgtgggcggggctttagcaataagtcacacctcctc
agacaccagaggacacacacaggggagaagccctatgtctgcagggagtgtgggcggggc
tttcgcaataagtcacacctcctcagacaccagaggacacacacaggggagaagccctac
gtctgcagggagtgtgggcggggctttagcgataggtcaagcctctgctatcaccagagg
acacacacaggggagaagccctacgtctgcagggaggatgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Disease (1)   
   OMIM (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (39)   
   RefSeq(nuc) (3)   
   GenBank (18)   
   EMBL (18)   
3D Structure (5)   
   PDB (5)   
Protein domain (14)   
   Pfam (14)   
All databases (108)   

Download RDF
DBGET integrated database retrieval system