KEGG   Homo sapiens (human): 57819
Entry
57819             CDS       T01001                                 
Symbol
LSM2, C6orf28, G7B, YBL026W, snRNP
Name
(RefSeq) LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
hsa  Homo sapiens (human)
Pathway
hsa03018  RNA degradation
hsa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    57819 (LSM2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    57819 (LSM2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsa03019]
    57819 (LSM2)
   03041 Spliceosome [BR:hsa03041]
    57819 (LSM2)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     57819 (LSM2)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     57819 (LSM2)
Spliceosome [BR:hsa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    57819 (LSM2)
 Complex C
  U2 snRNP components
    57819 (LSM2)
SSDB
Motif
Pfam: LSM SM-ATX DYW_deaminase
Other DBs
NCBI-GeneID: 57819
NCBI-ProteinID: NP_067000
OMIM: 607282
HGNC: 13940
Ensembl: ENSG00000204392
UniProt: Q9Y333
Structure
Position
6:complement(31797396..31806966)
AA seq 95 aa
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq 288 nt   +upstreamnt  +downstreamnt
atgctcttctattcttttttcaagtcccttgtgggcaaggatgtggtcgtggaactaaag
aatgacctgagcatctgtggaaccctccattctgtggatcagtatctcaacatcaaacta
actgacatcagtgtcacagaccctgagaaataccctcacatgttatcagtgaagaactgc
ttcattcggggctcagtggtccgatacgtgcagctgccagcagatgaggtcgacacacag
ttgctacaggatgcggcaaggaaggaagccctgcagcagaaacagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (52)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (7)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (21)   
   RefSeq(nuc) (1)   
   GenBank (10)   
   EMBL (10)   
3D Structure (7)   
   PDB (7)   
Protein domain (3)   
   Pfam (3)   
All databases (93)   

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