KEGG   Homo sapiens (human): 6829
Entry
6829              CDS       T01001                                 
Symbol
SUPT5H, SPT5, SPT5H, Tat-CT1
Name
(RefSeq) SPT5 homolog, DSIF elongation factor subunit
  KO
K15172  transcription elongation factor SPT5
Organism
hsa  Homo sapiens (human)
Pathway
hsa03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    6829 (SUPT5H)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hsa03021]
    6829 (SUPT5H)
   03019 Messenger RNA biogenesis [BR:hsa03019]
    6829 (SUPT5H)
Transcription machinery [BR:hsa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     6829 (SUPT5H)
  RNA polymerase I system
     6829 (SUPT5H)
Messenger RNA biogenesis [BR:hsa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     6829 (SUPT5H)
SSDB
Motif
Pfam: KOW Spt5-NGN Spt5_N DUF3912 DUF150_C Ribonuc_P_40
Other DBs
NCBI-GeneID: 6829
NCBI-ProteinID: NP_001104490
OMIM: 602102
HGNC: 11469
Ensembl: ENSG00000196235
UniProt: O00267
Structure
Position
19:39445582..39476670
AA seq 1087 aa
MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRS
GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
LGKLLEA
NT seq 3264 nt   +upstreamnt  +downstreamnt
atgtcggacagcgaggacagcaacttttccgaggaggaggacagcgagcgcagcagtgac
ggcgaggaggccgaggtagacgaagagcggcggagtgcagcgggcagtgagaaagaagaa
gagcctgaggacgaagaggaggaggaagaggaggaggaatacgatgaggaagaggaggaa
gaagatgatgaccgaccccccaagaaaccccgccatggaggcttcattctggacgaggct
gatgttgacgatgagtatgaggacgaggaccagtgggaggatggagcagaggacattcta
gagaaagaagagattgaagcctccaatatcgataatgttgtcctggatgaagatcgttct
ggggctcgccgcctgcaaaacctctggagggaccagcgagaagaagaactgggcgagtat
tacatgaagaaatacgccaagtcatctgtgggagagacggtgtatggaggatctgatgag
ctctcagacgacatcacccagcagcagctgctcccaggagtcaaggatcccaatctgtgg
actgtcaaatgtaagattggggaggaacgggccacggccatttccttgatgcgcaagttc
attgcctaccagttcacagacacgcccctgcagatcaagtcagtagtggcaccagagcat
gtgaagggctacatctacgtggaggcctacaagcagacccacgtgaagcaggccattgag
ggggtgggcaacctgcggcttggctactggaaccagcagatggtgcccatcaaggagatg
acagacgtgctcaaagtggtgaaggaggtggccaacctgaaaccaaagtcctgggtccgc
ctcaagcggggcatctacaaggatgacattgctcaggtggactacgtggagcccagccag
aacaccatctccctgaagatgatcccacgcatcgactacgatcgcatcaaggcccgcatg
agcttgaaagactggtttgccaaaaggaagaagtttaagcggcctccacagaggctgttt
gatgctgagaagatcaggtccctggggggtgatgttgcctctgatggtgacttcctcatc
tttgaggggaaccgttacagccggaagggctttctgttcaagagcttcgccatgtctgct
gtgatcacggagggtgtgaagccaacactctctgagctggaaaagtttgaggaccagcca
gagggcattgacctggaggtggtgactgagagcacagggaaggagcgggagcacaacttc
caacctggggacaacgtggaggtctgtgagggtgagctcatcaacctgcagggcaagatc
ctcagcgtggatggcaacaagatcaccatcatgcccaagcatgaggacctcaaggacatg
ttggagttcccagcccaggaacttagaaaatacttcaagatgggggaccacgtgaaggtg
attgctggccgattcgagggcgacacaggcctcattgtgcgggtggaggagaatttcgtt
atcctgttctctgacctcaccatgcatgagctgaaggtgctcccccgggacctgcagctc
tgctcagagacagcatcaggtgtggatgttgggggccagcatgaatggggcgagctggtg
cagctggatccccagactgtgggtgtcatcgtgcgactagaacgggagaccttccaggtg
ctgaacatgtacgggaaggtggtgactgtcagacatcaggctgtgacccggaagaaggac
aaccgctttgctgtggccttggactcagagcagaacaacatccatgtgaaagacatcgtt
aaggtcattgatggcccccactcaggccgagaaggggagattcgccatctcttccgaagc
ttcgccttcctacattgcaagaaactggtggagaacgggggcatgtttgtctgcaagacc
cgccacctggtgctggctgggggctcaaagccccgtgatgtgaccaacttcaccgtgggt
ggctttgcgcctatgagtccccggatcagcagccccatgcaccccagtgctggaggtcag
cgtggcggctttggtagcccaggtggcggcagtggtggcatgagcaggggccggggccgg
agggacaacgaactcatcggccagaccgtgcgcatctcccaggggccctacaaaggctac
atcggtgtggtgaaagatgccacagagtccacggcccgtgtggagctgcactccacctgc
cagaccatctctgtggaccgtcagcggctcaccacggtgggctcacggcgcccgggcggc
atgacctcgacctatgggaggacgcccatgtatggctcccagacgcccatgtatggctct
ggctcccgaacacccatgtacggctcacagacacccctccaggatggtagccgcacccca
cactacggctcacagacgcccctgcatgatggcagccgcactcctgcccagagtggggcc
tgggaccccaacaaccccaacacgccgtcacgggctgaggaagaatatgagtatgctttc
gatgatgagcccaccccgtccccgcaggcctatgggggaacccccaatccccaaacacct
ggctacccagacccctcgtccccacaggtcaacccacaatacaacccgcagacgccaggg
acgccggccatgtacaacacagaccagttctctccctatgctgccccctccccacaaggt
tcctaccagcccagccccagcccccagagctaccaccaggtggcgccaagcccagcaggc
taccagaatacccactccccagccagctaccaccctacaccgtcgcccatggcctatcag
gctagccccagcccgagccccgttggctacagtcctatgacacctggagctccctcccct
ggtggctacaacccacacacgccaggctcaggcatcgagcagaactccagcgactgggta
accactgacattcaggtgaaggtgcgggacacctacctggatacacaggtggtgggacag
acaggtgtcatccgcagtgtcacggggggcatgtgctctgtgtacctgaaggacagtgag
aaggttgtcagcatttccagtgagcacctggagcctatcacccccaccaagaacaacaag
gtgaaagtgatcctgggcgaggatcgggaagccacgggcgtcctactgagcattgatggt
gaggatggcattgtccgtatggaccttgatgagcagctcaagatcctcaacctccgcttc
ctggggaagctcctggaagcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Disease (1)   
   OMIM (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   HGNC (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (4)   
   OC (1)   
Protein sequence (8)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (40)   
   RefSeq(nuc) (6)   
   GenBank (17)   
   EMBL (17)   
3D Structure (25)   
   PDB (25)   
Protein domain (6)   
   Pfam (6)   
All databases (114)   

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