KEGG   Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365: LBUL_1406
Entry
LBUL_1406         CDS       T00419                                 
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
lbu  Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Pathway
lbu03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:lbu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    LBUL_1406
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lbu03400]
    LBUL_1406
Enzymes [BR:lbu01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     LBUL_1406
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     LBUL_1406
DNA repair and recombination proteins [BR:lbu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     LBUL_1406
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS NFACT_N zinc-ribbons_6 Ribosomal_S13 Zn_Tnp_IS1595
Other DBs
NCBI-ProteinID: ABJ58919
UniProt: Q049F3
Position
complement(1317475..1318296)
AA seq 273 aa
MPEMPEVETVRRTLRPLVVGKTIDHVDIWYDKVITGDPETFKRELKGKTFTVVDRYAKFL
LFRLGDLTVVSHLRMEGKYHLTTWDAPVDKHEHLQFAFTDGSSLRYADVRKFGRLQLVET
GTEFQVTGLKNLGVEANSPEFRLDYFEKGLKKRSMNIKSLLMSQTLVAGLGNIYVDEVLW
QSRINPLTPANELTKDQVKQLHSAINETIEEATKYGGTTVHSFLNAEGGAGHYQEKLKVY
GKEGQPCPRCGEDFVKIKICGRGTTYCLHCQKR
NT seq 822 nt   +upstreamnt  +downstreamnt
atgccagaaatgccagaagttgaaacggtccgccggaccctgcggcccttggtcgtgggc
aaaacgatcgaccatgtcgatatttggtacgacaaggtcatcaccggcgacccggaaact
tttaaaagggagttaaagggcaagacctttaccgtcgttgaccgctatgccaaattcctg
ctcttccgtttaggcgacttgacggtcgtttcccacttgcggatggaaggcaagtaccat
ctaacgacctgggatgcaccggtagacaagcatgagcacctgcagtttgcttttaccgat
ggaagcagcctccgctacgcggatgtccgcaaattcggccgcctgcaattggtggaaact
ggaactgaatttcaggtcaccggcttgaagaatttgggcgttgaagcaaatagtccagaa
tttagattggactactttgaaaaaggcttgaagaagaggagcatgaacatcaagagcctg
ctcatgagtcagaccctggtggccggcctgggcaacatctatgttgatgaagtcctctgg
caaagccggattaaccccttaacgccagctaacgaattaaccaaggaccaggtcaaacag
ctccattcagccatcaatgaaaccatagaagaagctactaaatacggcggcaccaccgtc
cacagcttcttaaacgcggaagggggggccggccactaccaggaaaagctcaaggtctat
ggcaaggaggggcagccatgcccccgctgcggggaagactttgtcaagatcaagatctgc
gggcggggaaccacctactgcctgcattgtcaaaagaggtaa

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