KEGG   Mesorhizobium japonicum MAFF 303099: mll4606
Entry
mll4606           CDS       T00043                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mlo  Mesorhizobium japonicum MAFF 303099
Pathway
mlo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mlo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    mll4606
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mlo03400]
    mll4606
Enzymes [BR:mlo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     mll4606
DNA repair and recombination proteins [BR:mlo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     mll4606
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: BAB51222
RhizoBase: mll4606
UniProt: Q98DP8
Position
complement(3654504..3656993)
AA seq 829 aa
MAGLEQYHTKRDFKKTSEPAGKVARTGKNEAGGIFVIHKHAATRLHYDLRLEHDGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWMPETDPAKA
MKKGHISFELNGHKLHGLWHLVRLKPRAGEKRDNWLLIKSDDAAARPGEDILKERPESVK
SGLTIEEVGEGKAAKGRKPEVWHSNKPAAGKAKAAARKLDFIEPQLATLERDAPPGKDWL
HEVKFDGYRMQAHIAGTDVRLLTRTGLDWTEKFGGEIIAELAGLKCSDAIIDGEIVVLAD
SGVSSFALLQQDLSAKRANRFLYYVFDLMRLDGKDLRAEPLVERKQALQELLGKQAENPA
VRFSDHFFEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYL
PSDKTGRGLRSLLVGYYEGGKLQYAGRVGTGFSVKGATELKTRLDALQAKASPFDKAVPK
GKGLVWVKPELVGEVEFRSWTSDRIVRHASFQGLREDKPAEDVVQEKPKAATGKAKPASS
GAGTMTTSVKLSHPDKLLWPDEKISKQGLLDHYAEVWPRMEQFVVNRPLSLVRAPDGIGG
PRFFQKHASAGMSDRIARMKDPTDGEEILFVRDFDGVAALVQYGVVEIHIWGCTIDKLEQ
PDQIIFDLDPDEGVDVKAVREAALDIRGKLDELSLPNFVKTSGGKGYHVLVPLKPSADWE
AVKTFAHDFAKALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYSSRAKKGAT
VSMPVTWAEIEAGLAPNAFPIGDKTTLAKLAEADPWMDFFKQGKVLKRG
NT seq 2490 nt   +upstreamnt  +downstreamnt
atggccggcctcgaacagtatcataccaagcgcgatttcaagaagacatcggagccggcg
ggcaaggtcgcacgcaccgggaaaaacgaagccgggggcatcttcgtcatccacaagcac
gcggcgaccaggctgcactacgaccttcggctcgagcatgacggcgtgctgtggagctgg
gcggtgacgcgggggcccagcctcgatccgcacgagaagcggctggccgtccatgtcgag
gaccacccgatcgactatgcgccgttcgaaggcacgatcccgaagggcgagtatggcggc
ggctcggtcatcgtctgggacgaggggacatggatgcctgagaccgacccggccaaggcg
atgaagaagggccacatcagtttcgagctcaacggccacaaattgcatgggctgtggcat
ctggtgcggctgaagccgcgggcgggcgaaaagcgcgacaactggctcttgatcaagtcc
gacgatgccgcggcgcgcccgggcgaggacattttgaaggagaggccggaatcggtgaag
tcgggcctgacgatcgaagaggtcggcgagggcaaggcggccaagggccgaaagcccgag
gtctggcattcgaacaagccggccgccggcaaggcgaaggccgcggcgcgcaaactcgac
ttcatcgaaccgcagctggcgacgctggagcgggatgcaccgccgggcaaggactggctg
catgaagtcaaattcgacggctatcgcatgcaggcgcatatcgccggcacggatgtgcgg
ctcttgacccgcaccggcctcgactggacggaaaaattcggcggcgagatcattgccgag
ctcgccgggctgaagtgcagcgacgccatcatcgacggcgagattgtcgtgctggccgac
agcggcgtctcgtccttcgcgctgctgcagcaggatttgtcggcgaagcgggcaaaccgc
ttcctctattacgtgttcgacctgatgcgtctcgacggcaaggatttgcgcgccgagccg
ctggtcgagcgcaagcaggccttgcaggagctgctcggcaagcaggccgagaacccggcg
gtgcgtttctccgaccattttttcgagcccggcaagatcatgctggagcatgcctgcagg
atggggctggaaggcgtcgtgtccaaacgcgccgatgcgccctatcgcagcgggcgcggc
ccgacctgggtgaagtcgaaatgcacggcacggcaagaattcgtcatcggcggctatctg
ccgtccgacaagaccgggcgcgggctgcggtcgctgctggtcggctactacgagggcggc
aaactgcagtacgccggtcgtgtcggcaccggtttctccgtcaagggcgcgacggagctg
aagaccaggctcgacgcgctgcaggcgaaggcttcgcccttcgacaaggccgtgccgaaa
ggcaagggcctggtctgggtcaagccggaattggtcggcgaagtggagtttcgcagctgg
acgtcggaccgtatagtgcgtcatgcctcgttccaggggctgcgcgaggacaagccggcg
gaggacgttgtgcaggaaaagcccaaggcagcgacaggcaaggccaagccggcctcgagc
ggcgccgggacgatgacgaccagcgtaaaactctcgcatcccgacaagctgctctggccc
gacgaaaagatctccaagcagggcctgctcgaccattacgccgaggtctggccccgcatg
gagcagttcgtcgtcaaccggccgctcagcctggtgcgggcgccggacggcatcggcggc
ccgcgcttcttccagaaacatgcctcggccggcatgagcgacagaatagcccggatgaag
gacccaacggatggcgaggagatcctgttcgtgcgggatttcgacggtgtggcggcactc
gtccagtatggcgtggtcgagatccacatctggggctgcacgatcgacaagcttgaacag
ccggaccagatcatcttcgatctcgatcccgatgaaggcgtcgacgtcaaagcggtgcgc
gaggcggcgctcgatataagggggaagctcgacgagctgtcgctgccgaacttcgtcaag
acatcgggcggcaagggctatcatgtgctggtgccgctgaaaccgtcggcggattgggag
gcggtgaagaccttcgcgcatgatttcgccaaggcgctcgagcagggtgcccccgaccgc
tacacggcgacgctgtcgaagaaggcgcggaccgggaaaatcttcgtcgactatctgcgc
aatggccgcggctcgacgacggtcgcgccctattcctcgcgcgccaagaaaggggccacc
gtgtcgatgccggtgacctgggccgagatcgaggccggcctggcgccgaatgctttccct
ataggcgacaagacgacgcttgcgaagttggcggaagccgacccgtggatggatttcttc
aagcagggcaaggtgttgaagcgggggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (36)   

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