KEGG   Mus musculus (house mouse): 100043292
Entry
100043292         CDS       T01002                                 
Symbol
Alyreffm10, Gm4340
Name
(RefSeq) Aly/REF export factor family member 10
  KO
K12881  THO complex subunit 4
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03013  Nucleocytoplasmic transport
mmu03015  mRNA surveillance pathway
mmu03040  Spliceosome
mmu05014  Amyotrophic lateral sclerosis
mmu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100043292 (Alyreffm10)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100043292 (Alyreffm10)
   03015 mRNA surveillance pathway
    100043292 (Alyreffm10)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    100043292 (Alyreffm10)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    100043292 (Alyreffm10)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    100043292 (Alyreffm10)
   03041 Spliceosome [BR:mmu03041]
    100043292 (Alyreffm10)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100043292 (Alyreffm10)
    TREX complex
     100043292 (Alyreffm10)
Spliceosome [BR:mmu03041]
 Complex C
  Other components
   EJC/TREX
    100043292 (Alyreffm10)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100043292 (Alyreffm10)
SSDB
Motif
Pfam: RRM_1 DUF1645 TFIIA CCDC53 EOS1 DUF2681 DUF6591 DDHD Presenilin Spt20_SEP
Other DBs
NCBI-GeneID: 100043292
NCBI-ProteinID: NP_001171006
MGI: 3782524
Ensembl: ENSMUSG00000090854
Position
10:104029903..104032383
AA seq 268 aa
MTTMADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRP
KQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYD
RCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGM
TRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQK
QQQKQQQQLSAEELDAQLDAYQEMMDTS
NT seq 807 nt   +upstreamnt  +downstreamnt
atgactaccatggctgacaaaatggacatgtcattggaagacatcattaagctgaccaag
atccagcaaagacgtcatgacaggcctgattcccgggtgaatcgaggcactgggtctaag
aggtataggccagctttcacccatggtggaaggaacaggctggcaccatactgcagacca
aaacaacttccagacaagtggcagcatgacctgttcattggaggcttcaggggtcaaaac
cacgtggatactggtgggaagctcttcttgtcaaatctgcacttcggagtgtcagatgct
gatattcagctactctttgctgaatttggaacgttgaagaaatctgctgtgcactatgat
cgctgtggacgaagtttagggacagcacaggtgcactttgaaaggaaagcagatgccctg
aaggctatgagagagtacaatggcgcccctttggatggccgccctatgaacatccagctt
gccacctcacagattgatagacaaggaagacctgcacaaagcaaaaataggggcggcatg
acaagaaaccctggctctggagtattaagtggtggaggcaccaagaaatggacacttgga
ggcagccagggaagagggagaggcaccatcaggaactcaaaactgcagcaacagcagcag
cagcagaagcagaagcagcagcagcagcagcagaagcagcagcagaagcagcagcagaag
cagcagcagaagcagcagcagcagctatctgcagaggagctggatgcccagctggatgct
tatcaggaaatgatggacaccagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (10)   
   Pfam (10)   
All databases (46)   

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