KEGG   Mus musculus (house mouse): 103677
Entry
103677            CDS       T01002                                 
Symbol
Smg6
Name
(RefSeq) SMG6 nonsense mediated mRNA decay factor
  KO
K11124  protein SMG6 [EC:3.1.-.-]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103677 (Smg6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    103677 (Smg6)
   03032 DNA replication proteins [BR:mmu03032]
    103677 (Smg6)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     103677 (Smg6)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     103677 (Smg6)
DNA replication proteins [BR:mmu03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (animals)
    103677 (Smg6)
SSDB
Motif
Pfam: EST1_DNA_bind PIN_4 EST1 PIN_9
Other DBs
NCBI-GeneID: 103677
NCBI-ProteinID: NP_001002764
MGI: 2144117
Ensembl: ENSMUSG00000038290
UniProt: P61406
Position
11:74816665..75055274
AA seq 1418 aa
MAEGLERVRISASELRGILATLAPQAGSRENMKELKEPRQRKDNRRPDLEIYKPGLSRLR
NRPKTKEASGNEEFKDEIVNDRDSSAVGNDTQLIQVCKELDSQQQNGPIDAENSQAQETF
PKTVGLEDRSLKIIKRSKKPDLQIYQPGRRLQTITKESAGRADEEEILNQVEQLRIEEDE
CKGEAIKEEVNNKPDKTEIEKHQSNDRVRTAKGEKGKKIEKGEGSKKVADDSVPGKPGSV
KRYSRSDKRRNRYRTCSTSSAGSNNSAEGAGLTDNGCRRRRQDRAKERPRLKKQVSLSST
DSLDEDRVDEPDVLGSRRSSERKKHLERNWSGCGEGEQKSNGKENRSALRVTFDAETMSK
DSPVVRSVKDNVDRMKSDKGPSSGGKGSEKQELRHPRQELRDRGRGILILPAHTALSVSS
SGSPESTPLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKSQTPQLHFLDTDD
EISPTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYAGYSPLQYPVGPTNGMYPG
AYYPGYPAPSGQYVCSPLPASTMSPEEIEQHVRNMQQQELHRLLRVADNQELQLSNLLSR
DRISTEGMEKMAQLRTELLQLYERCILLDIEFSDSQNVDQILWKNAFYQVIEKFRQLLKD
PNSENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYA
LISAQRSMICQGDISRYREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRR
KLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFDMSPDKWRKGKKS
TFRHVGDDTTRLEIWIHPSHSRSAQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHG
KLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSE
ECRSVIQEQAASLGLAMFSLLVQRCTCLLKDSAKAQLSSPEDQEDQDDIKVSSFVPDLKE
LLPSVKVWSDWMLGYPDTWNPPPTSLDLPLQVAVDVWSTLADFCNILTAVNQSEVPLYKD
PDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYFLEALCGQ
EEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGKQLEDEEEDVVIEDFEEDSEAEGSGGEDD
IRELRAKKLALARKIAEQQRRQEKIQAVLEDQSQMRQMELEIRPLFLVPDTNGFIDHLAS
LARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLERRFESR
DSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDYMPTSKEEPIR
LLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQVG
NT seq 4257 nt   +upstreamnt  +downstreamnt
atggcggaggggttggagcgtgtgcggatctccgcatcggaactgcgagggatcctggcc
actctggctccgcaggccgggagcagagaaaacatgaaggaactaaaggaacccagacag
cgcaaagataataggcgtccagatttggaaatctataagcctggactttctcgactaagg
aacagacctaaaactaaggaggcttctgggaatgaggaatttaaggatgagatagtaaat
gacagagattcttctgctgttgggaatgatacacagcttattcaagtttgcaaggaattg
gacagccaacagcaaaatggccctatagatgcagaaaatagtcaggcacaggaaactttt
ccaaagactgttggactagaggaccgaagtctaaagatcatcaaaagaagcaagaaacca
gacctgcagatctaccagcctggaaggcggttgcagaccattaccaaagagtcagcaggc
agggcagatgaagaagagatcctcaaccaagtggagcagttgaggatagaggaggatgag
tgtaagggagaagctataaaagaagaagttaataacaaaccggataaaaccgagatagaa
aagcaccaaagtaatgaccgtgtaagaactgccaagggagaaaagggaaaaaagattgaa
aagggggaggggtcaaagaaggtggctgatgactctgtcccaggaaagcctggctctgta
aagagatactcgagatcagacaagagaaggaatcgctaccgcacttgcagtaccagctca
gctggtagcaacaacagtgctgagggagctggcctgaccgataatggatgtcgccggcgg
cgccaggatcgggccaaggagaggccacgactgaagaagcaggtatctttgtcctcaact
gattccttagatgaggacagagttgatgagcctgatgtcctagggtccaggaggagctca
gaaaggaagaagcatttagaaagaaattggtctggctgtggtgagggtgaacagaaaagc
aatggtaaagaaaaccgaagtgcccttcgtgtcacttttgatgcagaaaccatgagtaaa
gactcccctgtggtgaggtcagtcaaagataatgtggatagaatgaagtctgacaaaggc
ccaagcagtgggggtaagggctctgagaagcaggagctcagacacccgagacaagaactt
cgagatcgtggtcgtggtatcctgattctgcctgcccacactgccctatctgtcagttca
tcaggttctccggagtctacacctttgggacctcgacttttatttggatctggtagtaag
ggatctcggagttggggccgtggaggcactacccgccgactatgggacccaaacaatcct
gaccagaagcctgccctaaaaagccagacacctcagctacatttcttggacactgatgat
gaaattagccctacatcttggggtgattcacgtcaggcccaagcatcttactataaattt
caaaactctgataacccctattattaccctcggacaccaggccctgcctctcagtatccc
tatgcaggctatagccctctgcagtacccagtaggccctacaaatggtatgtatccaggg
gcttactacccgggctatcctgccccctcaggacaatatgtgtgtagccctctccctgct
agcaccatgagtcctgaggaaatagaacagcacgtgcggaacatgcagcaacaggagctc
catcggcttctccgagtggctgacaaccaggaactgcagctcagcaacctgctttccagg
gaccgcatcagcactgagggcatggagaagatggctcagctcagaactgaactactgcag
ctgtacgagcgctgtattctattagatattgaattctccgacagtcagaatgtagatcag
atcctgtggaagaacgctttctatcaggtgattgagaagttcaggcagcttctcaaggat
ccaaacagtgagaacccagagcagattcggaacagactcttggagctcttagatgagggc
agtgacttctttgatagtttgcttcagaaactacaggttacttacaagttcaaactggag
gactacatggatgggcttgccattcgaagcaagcctttacgaaaaacagtgaaatatgcc
ttgatcagtgctcaacgaagtatgatttgccaaggagatatctctaggtatcgggagcaa
gccaacgatacagcaaactatgggaaggctcgcagttggtatctgaaggctcagcacatt
gctcccaagaatgggcgcccctataaccagttggctctactggcagtgtatacgaggagg
aagcttgatgctgtatattactatatgcgcagtttagcagccagcaaccctatcctgact
gccaaggagagtctcatgagtttatttgaagagactaaacgaaaggctgaacagatggaa
aagaagcagcatgaggaatttgatatgagccctgataagtggcgaaaaggaaagaagtct
actttccggcatgttggggatgacactactcgcctggagatttggattcatccatcacat
tctcggtctgcccagggcactgagtctgggaaggattctgagcaggagaatggtctgggc
agcctgagtcccagtgatctgaacaaaaggttcatcctcagttttctccatgcccatggg
aagctgtttacccggattgggatggagacattccctgcagtggctgagaaggtccttaag
gagttccaagtattgctgcagcatagcccatctcctattggaagtacccgtatgctgcag
cttatgaccatcaacatgtttgccgtgcataactcccagttgaaagactgcttctcagag
gagtgtcgttctgtgatccaggaacaagctgcatccttgggcttggctatgttttctcta
ctggtccagcgctgcacatgcctacttaaggactctgctaaagctcagctgtcctctcct
gaggaccaagaggaccaagatgacatcaaggtatcttccttcgtcccggacctgaaggag
ctgctccccagtgtgaaagtctggtctgattggatgcttggctacccagacacctggaat
cctccacccacatctttggatctgcccttgcaggttgctgtggatgtctggtcaacacta
gctgatttctgtaacatactgactgcagtcaatcagtctgaggtgccactgtacaaggac
ccagatgatgacctcaccctgcttatcctggaagaggatcggcttctctctggctttgtc
cccttgctggctgcccctcaggacccctgctacgtggagaaaacctcggataaggttatt
gcagctgactgcaaaagggtcacagtgctgaagtattttctggaagccctttgtggacaa
gaagagcctctgctggcattcaagggtggaaaatatgtgtcagtggcacccgtcccagac
accatgggaaaggaaatgggaagccaagagggaaaacaactggaagatgaggaagaagat
gtggtgattgaagactttgaggaagattcagaggctgaaggcagtgggggtgaggatgac
atcagggaacttcgggccaagaagctggctctagcaaggaagatagctgagcagcagcgt
cgccaggaaaagatccaggctgttttggaagaccagagtcagatgaggcagatggagctg
gagatcagacccttgttcctcgtaccagataccaacggcttcattgaccacctggccagt
ctggctcggctgctggagagcaggaagtacatcctggtggtgcccctcatcgtgatcaat
gagctggacggcctcgccaaagggcaggagacagaccaccgggctgggggctatgcccgt
gtggtgcaagaaaaggcccgaaaatccattgagttcctcgaacggagatttgagagtcgg
gactcctgcctgcgggccttgaccagccgtggcaatgaacttgaatctatcgccttccga
agtgaggacattactggacagctgggtaacaacgatgacctgatcctctcttgctgcctg
cactactgcaaagacaaggctaaggattacatgcccaccagcaaagaggagccaatccgc
ctgttacgggaggtggtgttgctgaccgatgatcggaaccttcgtgtaaaggcgctgaca
aggaatgtgcctgtgagggacatcccagccttccttacgtgggcccaggtgggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (23)   
   RefSeq(nuc) (3)   
   GenBank (10)   
   EMBL (10)   
Protein domain (4)   
   Pfam (4)   
All databases (52)   

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