KEGG   Mus musculus (house mouse): 104625
Entry
104625            CDS       T01002                                 
Symbol
Cnot6, CCR4
Name
(RefSeq) CCR4-NOT transcription complex, subunit 6
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104625 (Cnot6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    104625 (Cnot6)
Enzymes [BR:mmu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     104625 (Cnot6)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104625 (Cnot6)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     104625 (Cnot6)
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 LRR_1 LRR_6
Other DBs
NCBI-GeneID: 104625
NCBI-ProteinID: NP_001277670
MGI: 2144529
Ensembl: ENSMUSG00000020362
UniProt: Q8K3P5
Position
11:complement(49562324..49604227)
AA seq 557 aa
MPKEKYEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWSLTHLTALHLSD
NSLSCIPSDIAKLHNLVYLDLSHNQIQSLPAELGNMVSLRELHLNYNQLRVLPFELGKLF
QLQTLSLKGNPLTQDILNLCLEPDGTRRLLNYLLDNLSGTAKRISTEQPPPRSWIMLQEP
DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQE
VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLILVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNSLPDSG
VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQLEL
LLPFLPQVNGIHLPGRR
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgcccaaagaaaagtacgagccccctgaccctcggaggatgtacacaattatgtcctct
gaggaagcagcaaatggaaagaaatcacattgggcagagcttgaaataagtggaaaagta
agaagcttaagctcatctttgtggtcactcactcacttgacagctttgcatctgagtgac
aattccctgtcctgtattccttcagacattgccaagcttcacaatctggtatatctggac
ctgtcccataatcaaatccagagtttaccggcagaactcggaaacatggtatcactcagg
gagctccatttaaattacaaccagttacgagttctaccttttgagctgggaaaactgttt
cagttgcagactttaagcctgaaaggaaatccacttacccaggatatattgaacctctgt
ctggagccagatggaacaagaaggctactgaactacttgctcgataatttgtcaggtact
gcaaaaagaatttcaacagaacaaccacctccaagatcttggatcatgttacaagaacca
gacagaacaaggccaacagccttgttttctgtcatgtgctataatgttctttgtgataaa
tatgcgacccggcagttatacggctactgtccatcatgggcacttaattgggactacagg
aaaaaggccattattcaagaaattttgagctgcaatgctgatattataagtcttcaggaa
gttgaaacagagcagtattacagtttttttctggtagaactgaaagaacgtggctataat
ggattctttagtccaaagtctcgagctcggactatgtctgaacaagaacgaaagcatgtt
gatggctgtgcaatattcttcaagacggaaaaattcactttggttcagaaacacacagtt
gaatttaatcagctagcaatggcgaattcagaagggtctgaagccatgttgaacagagtc
atgacaaaggataacattggagttgcagtactgctagaacttcgaaaggaattgattgaa
atgtcatctggaaaaccacatctgggaacagaaaaacaacttattctcgtggctaatgct
catatgcattgggaccctgagtactcagacgtgaagttggtacaaactatgatgttcctc
tcagaagtgaagaatattattgataaagcctctcggagcctcaaatccagtgtattggga
gaatgtggaactattcctcttgtgttatgtgcagatctgaattctttgccagactctggt
gttgtagagtatttgagcactggtggggtagaaacaaatcataaagacttcaaggaactg
aggtacaatgaaagtctcacaaacttcagctgcaatgggaagaatgggatgaccaatgga
aggatcactcatggtttcaagttaaagagtgcctatgagaatggcctgatgccttacacc
aattatacatttgatttcaagggtataattgactacatcttctattctaaacctcagctg
aatactttagccatcctgggacctctggatcaccattggctagtcgagaataacatcagc
ggctgcccacatccacttattccctctgaccacttctcactttttgcacaattggagctc
ttactgcctttcctgccccaagttaatggcattcaccttcctggcaggaggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (11)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (9)   
DNA sequence (55)   
   RefSeq(nuc) (9)   
   GenBank (23)   
   EMBL (23)   
Protein domain (5)   
   Pfam (5)   
All databases (94)   

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