KEGG   Mus musculus (house mouse): 107932
Entry
107932            CDS       T01002                                 
Symbol
Chd4, 9530019N15Rik, D6Ertd380e, Mi-2beta, mKIAA4075
Name
(RefSeq) chromodomain helicase DNA binding protein 4
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03082  ATP-dependent chromatin remodeling
mmu05165  Human papillomavirus infection
mmu05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107932 (Chd4)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    107932 (Chd4)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    107932 (Chd4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mmu03036]
    107932 (Chd4)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    107932 (Chd4)
  Chromatin remodeling factors
   NuRD complex
    107932 (Chd4)
SSDB
Motif
Pfam: SNF2-rel_dom CHDCT2 CHDII_SANT-like Helicase_C CHDNT DUF1087 PHD Chromo ResIII HDA2-3 PHD_2 DEAD zf-PHD-like
Other DBs
NCBI-GeneID: 107932
NCBI-ProteinID: NP_001333539
MGI: 1344380
Ensembl: ENSMUSG00000063870
UniProt: Q6PDQ2 Q8BM83 Q3ULG0
Position
6:125073144..125107554
AA seq 1915 aa
MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPDEDLSEAETPKLKKKKKPKKP
RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK
SKSKRKEEEEEEDEDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA
PPPPPVEVPIRKAKTKEGKGPNARRKPKGSPRVPDAKKPKPKKVAPLKIKLGGFGSKRKR
SSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLRTAKKKKKGEEEVTAVDGYET
DHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKEDN
SEGEEILEEVGGDPEEEDDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGE
WLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADPNTPSPKPLEGRPERQFFVKW
QGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGDEEKSRKRKNKDPKFAE
MEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESEDVEIQDYDLF
KQSYWNHRELMRGEEGRPGKKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLH
PYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTI
INWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHV
LLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQN
NLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNMP
SKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPV
AAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLE
HEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSD
WNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKT
GSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETED
TELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQE
DLARNLGKGKRIRKQVNYNDGSQEDRDWQDDQSDNQSDYSVASEEGDEDFDERSEAPRRP
SRKGLRNDKDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRD
LRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQ
EFEHVNGRWSMPELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAEDGIKIE
ENSLKEEESTEGEKEVKSTAPEATVECAQPPAPAPATAPATATAPEDDKAPAEPPEGEEK
VEKAEVKERTEEPMETEAKGTTEVEKVEEKSAVDLTPIVVEDKEEKKEEEEKKDVMLQNG
ETPKDLSDEKQKKNSKQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWL
LAGIINHGYARWQDIQNDPRYAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVIEE
QLRRAAYLNMSEDPSHPSMALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQL
EELLSDMKADVTRLPATIARIPPVAVRLQMSERNILSRLANRAPEPPPQQVAQQQ
NT seq 5748 nt   +upstreamnt  +downstreamnt
atggcgtcgggcctgggctccccgtccccctgctcagcgggcagtgaggaggaggatatg
gacgcacttctgaacaacagcctgcccccaccccatccagaaaatgaggaagacccagac
gaggatttatccgaagcagagactccaaagctcaagaagaagaaaaagcctaagaaacct
cgagaccctaaaatccctaagagcaagcgccaaaaaaaggagctgggggacagctctggg
gaggggccagagtttgtggaggaggaggaagaggtggctctgcgctcagacagtgagggc
agcgactatactcctggcaagaagaagaaaaagaagctcggacctaagaaagagaagaag
agcaaatccaagcggaaggaggaggaggaagaggaggacgaggatgatgactcgaaggaa
cctaagtcatcagcccagcttttagaagactggggtatggaagacatcgaccatgtgttc
tcagaggaggattatcggaccctcaccaactacaaggccttcagccaatttgttagaccc
ctgattgctgctaaaaaccccaagattgctgtctccaagatgatgatggtcttgggtgca
aagtggagggaattcagtaccaacaaccccttcaagggcagctccggagcatcagtggca
gctgcggcggcggcggctgtggctgtggttgagagcatggtgacagctactgaagtcgcc
cctccccctccccctgtggaggtgccgatccgcaaggccaagaccaaggagggcaaaggt
cccaatgctcggaggaagccgaaaggcagcccgcgagtgcctgacgccaagaagcccaaa
cccaagaaagtagctcctctgaagatcaagctgggagggttcggctccaagcggaagaga
tcctcgagtgaggacgacgatttagatgtagagtctgacttcgacgatgccagtatcaac
agctattctgtttcggatggttccaccagccgcagtagtcggagccgtaagaaactccgg
accgctaaaaagaaaaagaaaggcgaggaggaggtgactgctgtggatggttatgagaca
gaccaccaggactattgcgaggtgtgccagcaaggcggcgagatcatcctgtgtgatacc
tgtccccgagcctaccatatggtgtgcctggacccagacatggagaaggccccggagggc
aagtggagctgtccgcactgtgagaaggaggggatccagtgggaagctaaggaggacaat
tctgagggtgaggagattctggaagaagtcgggggggacccagaagaggaggatgaccat
cacatggaattctgtcgcgtctgcaaggacggcggggagctcctgtgctgtgacacatgc
ccttcttcctaccacatccactgcctgaaccccccgctgccagagatcccaaacggcgaa
tggctctgtccccgctgtacttgtccagctcttaagggcaaagtgcagaagatcctaatt
tggaagtggggccagccaccgtctcccacaccagtgcctcggcctccagatgctgaccct
aataccccgtcgcccaagcccttggaggggcggccagagaggcagttctttgtgaaatgg
caaggcatgtcttactggcactgctcctgggtgtcagaactgcagttggagctgcactgt
caggtgatgttcagaaactaccagcggaagaatgatatggacgagccgccttctggggac
tttggtggagatgaagagaagagccggaagcgaaagaacaaggaccctaagtttgcagag
atggaagagcgcttctaccgctatggaataaaaccggagtggatgatgatccaccgcatc
ctcaaccacagtgtggacaagaagggccacgttcactatttaatcaagtggcgagacctg
ccctatgaccaggcgtcctgggagagcgaggacgtggagattcaggactacgacctgttc
aagcagagctactggaaccacagggagttaatgaggggtgaagaaggacgacccggcaag
aagcttaagaaggtgaagctacggaaactggaaaggcctccggagaccccaactgttgat
cccaccgtgaagtatgagcgacagccggagtatctggatgcgacgggtggaaccctgcat
ccctaccaaatggaaggcttaaactggctccgcttctcctgggctcagggaaccgatact
atcttggctgatgagatgggccttgggaaaactgtgcagacagcagtcttcctctactcc
ctctataaggagggtcactccaaaggccccttcttagtgagcgctcctctgtccaccatc
atcaactgggagagagagtttgagatgtgggctcctgatatgtatgtggtaacctatgtg
ggtgacaaggacagccgtgccatcatccgggaaaatgagttctcctttgaagacaatgcc
attcgtggtggcaagaaggcctcgaggatgaagaaagaagcatcggtgaaattccatgtt
ctgctgacatcctatgagttgatcaccattgatatggccatcttgggttctattgactgg
gcctgcctcattgtggatgaagcccatcggctgaagaacaaccagtctaagttctttcga
gttttgaatggttactcactccagcacaagctgttgctaactggaactccgttacagaac
aatctagaggaactgtttcatctgctcaactttctcacccctgagaggttccacaactta
gaaggcttcttggaggagtttgcagacattgccaaagaggaccagattaaaaaactccac
gacatgctggggcctcatatgttgcggcggctcaaagctgacgtcttcaagaatatgcca
tccaagacagagctgattgtgcgcgtggagttgagtcctatgcagaagaagtactacaag
tatattctcacgcggaatttcgaagcacttaatgctcgaggtggtggcaaccaggtttct
ctgctgaacgtggtgatggatcttaagaaatgctgcaaccacccttatctcttccctgtg
gcagcaatggaagcccctaagatgcctaatggtatgtatgatggcagtgccctaatcaga
gcatctgggaagttgttgctgctgcagaagatgcttaagaacctgaaagagggagggcat
cgtgtgctcatcttctcccagatgaccaagatgttggacttgctagaggattttttagaa
catgaaggttataaatatgaacgtattgatggtggaatcactgggaacatgcgtcaggag
gccattgatcgcttcaatgcaccgggtgctcaacagttctgcttcttgctttccactcga
gctgggggccttgggatcaatctggccactgcggacacagttattatatatgactctgac
tggaacccccataatgacatccaggcctttagcagagcccaccgtattgggcaaaataag
aaggtgatgatctaccggtttgtgacccgtgcatcagtggaggagcgcatcacgcaggtg
gcaaagaagaagatgatgctgacacatttagtggtacggcctggcctgggctccaagaca
ggctcaatgtctaaacaggagcttgatgatatcctcaaatttggcactgaggagctattc
aaggatgaagccacggatggaggaggagacaacaaggagggagaagacagcagtgttatc
cactatgacgataaggccattgaacgactgctggatcgaaaccaggatgagactgaagac
acagaattgcagggcatgaatgaatatttgagctcattcaaagtggctcagtatgtggta
cgggaagaagagatgggggaggaagaggaggtagaacgggaaatcataaaacaggaagaa
agtgtggatcctgactactgggagaaattgctgcggcaccattatgagcagcagcaagaa
gatctagcccgaaatctgggcaaaggaaaaagaatccgtaaacaggtcaactacaatgat
ggctcacaggaggaccgagattggcaggacgaccagtccgacaaccagtccgattactca
gtggcctcagaggaaggtgatgaagactttgacgaacggtcagaagctccccgcaggccc
agtcgcaagggcctgcggaatgataaagataagccattacctcctctgttggcccgtgtt
ggtgggaatattgaagtacttggttttaatgctcgtcagcgaaaagcatttcttaatgca
attatgcgatatggcatgccacctcaggatgcttttaccactcagtggcttgtgagagat
cttcgaggcaagtcagagaaagaatttaaggcttatgtgtcactcttcatgcgacatttg
tgtgagcctggggcagatggggctgagacctttgctgatggcgtcccacgagaaggcctg
tctcgtcaacatgttctcactaggatcggtgtcatgtctctgattcgaaagaaggttcag
gagtttgaacatgttaatggacgctggagcatgcccgaactggctgaagtagaggaaaac
aaaaaaatgtctcagccaggttcaccttctccaaagactcctacaccttccacaccaggg
gacacacaacccaatactcctgcgcctgtgccacctgctgaggatgggataaaaatagag
gaaaatagccttaaagaagaagagagcacagaaggagagaaggaagttaaatctacagcc
cctgaggcgactgtggagtgtgcacagccccctgcccctgcccctgccactgcccctgcc
actgccactgcccctgaggatgacaaggctcctgctgagcctcctgagggggaggaaaaa
gtggaaaaggcagaggtgaaggagagaacagaggagcctatggagacagaggccaaaggt
actactgaggtggagaaagtggaggagaagtctgcggtagacctgaccccgatcgtggtg
gaagacaaagaagagaagaaggaggaggaggagaaaaaggacgtgatgcttcagaatgga
gaaactcccaaggatcttagtgatgagaagcagaagaaaaacagcaaacagcgtttcatg
ttcaacattgcagatggtggttttactgagttgcactcactgtggcagaatgaagagcgg
gcagccacagtcactaagaagacttacgagatctggcaccgtcgccatgattactggctg
ctggctggcattataaaccacggctatgcccggtggcaggacatccagaatgacccacgg
tatgccatcctcaatgagcctttcaagggtgaaatgaatcgtggcaattttctagagatc
aagaataaatttttagctcgaagattcaagctcttagaacaagccctggtgatcgaggag
cagcttcgcagggcagcttacctgaacatgtccgaggacccctctcacccgtctatggcc
cttaacacccgcttcgctgaggtggagtgtttggcagaaagtcaccagcacctgtccaag
gagtcgatggcagggaataagccggccaatgcagtcctacacaaagtcctgaaacagctg
gaggaactgttgagtgacatgaaagctgatgtgacgcggctcccagccaccattgcccgc
atccccccagtcgctgtgaggttacagatgtcagagcggaacattctcagccgcctggca
aacagggcgccagaacctcccccacagcaggtagcccagcagcagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (46)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (12)   
   UniProt (3)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (40)   
   RefSeq(nuc) (8)   
   GenBank (16)   
   EMBL (16)   
Protein domain (13)   
   Pfam (13)   
All databases (117)   

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