KEGG   Mus musculus (house mouse): 108077
Entry
108077            CDS       T01002                                 
Symbol
Skic2, 4930534J06Rik, Ddx13, SKI, Ski2, Ski2w, Skiv2l
Name
(RefSeq) SKI2 subunit of superkiller complex
  KO
K12599  antiviral helicase SKI2 [EC:3.6.4.13]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108077 (Skic2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    108077 (Skic2)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     108077 (Skic2)
  mRNA degradation factors
   3'-5' decay
    Ski complex
     108077 (Skic2)
SSDB
Motif
Pfam: DSHCT Ski2_N MTR4_beta-barrel DEAD MTR4-like_stalk Helicase_C ResIII DUF3516 ALTTAQ_rpt
Other DBs
NCBI-GeneID: 108077
NCBI-ProteinID: NP_067312
MGI: 1099835
Ensembl: ENSMUSG00000040356
UniProt: Q6NZR5 Q8C2W7
Position
17:complement(35058202..35069180)
AA seq 1244 aa
MMETERLVLPPLDPLNLPLRALEVGCTGRWELLNVPGPPESTLPHGLPPCAPDLCQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKTDPWSLLAAVETPVPSDLQAQRHPTTGHILGYKEVL
LENTNLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMDEPSITDLHTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKDHPAPVPGLLSLSRLLEPLDLSGGDEDEGEAAGGPRGDNAS
PSPSGTPLVRASSLEDLVLKEAATVVSTPEPPKPPPQEQWAVPVDVTSPVGDFYRLIPQP
AFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIK
ALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFD
EVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVAR
PVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGYYAAVEAKKERMSKHAQTFGAKQPTH
QGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLF
LQRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATE
TFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRV
PEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHE
QALADLTKRLGALEEPDVTGQLADLPEYYSWAEELTETQNMIQRRIMESVNGLKSLSVGR
VVVVKNEEHHNALGVILQVSSNSTSRVFTTLVLCDKPVVSDNPRDKGPATPDVPHPDDLI
GFKLFLPEGPCEHTVAKLQPGDVAAISTKVLRVNGEKISEDFSKRQQPKFRKDPPLAAVT
TAVQELLRLAQSYPAGPPTLDPINDLQLKDVAVVEGGLRARKLEELIRGAQCVHSPRFPA
QYVKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC
AMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVKAVA
KRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQR
LAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq 3735 nt   +upstreamnt  +downstreamnt
atgatggagacggagcgactcgttctgcctcccctagatcccctgaacttaccccttcga
gctctggaagtggggtgcactggccgttgggagctgctgaacgtgccagggcctccagag
agcactctcccccatggcctccctccatgcgccccagatctgtgccaggaagcagagcag
ctgtttctgtcgtctccagcctggcttcctctacacggtgtagagcactcagctcgaaaa
tggcagaggaagacggatccctggtcactcctggctgccgtggagactccagtcccatct
gaccttcaggcccagagacacccaaccacaggccatatactgggctataaggaggtcctg
ctggagaacacaaatctgtcagctacaacctccttgtcccttcgccggcctccagggcca
gcctcccagtcgctatggggcaatccaacacagtaccctttctggccaggtgggatggat
gagcccagcataactgatctgcatactcgggaggaagctgaggaggagatagactttgag
aaagatcttctcactgtcccacctggcttcaagaaaggggtggattttgcccccaaagat
catccagctcctgtgccaggtttgctcagcctcagccgtctgctggagcctcttgatctg
agtggaggtgacgaggatgaaggcgaggcagcaggaggccctagaggggacaatgcctcc
ccctccccctctggtactcccctggtccgagcaagcagcttggaggatctagtgttgaag
gaagctgccacagtcgtatctaccccggagcctcccaaacctccacctcaggaacagtgg
gctgtgcctgtggacgtcacctcccctgtgggcgacttttaccgtctcatccctcagcca
gctttccagtgggcatttgagccagatgtgtttcagaagcaggccatcctgcacttggag
cagcacgactctgtctttgttgcagctcacacatctgctgggaagacagtggtggctgaa
tatgccatcgccctggcccagaaacacatgactcgtaccatctacacttctcctatcaaa
gccctgagcaaccagaagtttcgggacttccggaacacatttggggatgtagggctgctc
acaggggatgtgcagctgcacccagaggcctcctgcctcatcatgaccacggagatcctt
cgctccatgctgtacagtggctccgacgtcatccgagacctggagtgggtcatctttgat
gaagtccactatatcaatgatgctgagcgtggggtcgtgtgggaggaggtgctcatcatg
cttcctgagcacgtctccatcatccttctgagtgccaccgtccccaatgccctggagttt
gctgactggatcgggcggctgaagcggaggcagatctatgtgatcagcacggttgcccgg
ccggtccccctggagcactatctcttcacagggaacagccccaagacgcagggcgagctc
ttcctgctgctggactcccgaggggccttccacacccaggggtactatgctgcagtggag
gccaagaaagagaggatgagcaagcacgcccagactttcggggccaagcagcccacgcac
cagggtgggcctgcacaggaccgcggggtgtacctgtccctgctggcttccctccggacc
cgggctcagttgccagtggtagtgttcaccttctcccgaggccgctgtgatgagcaggct
tcgggcctcacctctctagacctcacgacaagctcggagaagagtgagatccacctcttc
ctgcagcgctgccttgcacggctccgaggctctgaccgacagctaccccaggtcctgcac
atgtcggagctccttcgccgaggcctaggtgtgcaccacagcggcatcctgcccatcctt
aaggagattgtggaaatgcttttcagcaggggcctggtcaaggtcttgtttgccaccgag
acttttgccatgggggtaaacatgccagccaggacggtggtgtttgactccatgcgcaaa
catgatggctctaccttccgggacctgctgcctggggagtacgtgcagatggcaggccgg
gcaggccggaggggcctggaccccacgggcaccgtcatccttctctgtaagggccgagtg
cctgagatggcagatctacaccgcatgatgatggggaaaccatcccaacttcagtcccag
ttccgcctcacatataccatgatcctcaacctgctgcgggtggatgccctcagagtggag
gacatgatgaagaggagcttctcagagttcccatcccgcaaggacagcaaggcccatgag
caggctctggctgacctcaccaagaggctgggggctttggaggagcctgatgtgactggt
cagttggctgacctacctgagtattacagctgggcggaggagctgacagagacccagaac
atgatccagcgacgcatcatggagtctgtgaatgggctgaaatctctctcagtgggaagg
gtggtagttgtgaagaatgaggaacatcacaatgcactgggtgtgatcctgcaggtctcc
tcaaactccaccagcagggtatttacaacattggtcttgtgtgataagcctgttgtgtct
gataacccaagggacaaggggccagccactccagatgtgccccacccagatgaccttata
ggcttcaagctgttcctgcctgaagggccctgtgagcacaccgtggccaagctccagcca
ggagatgtggctgccatctctaccaaagtgctccgggtgaatggggagaagatctctgag
gactttagcaagaggcagcaaccaaaattcagaaaggaccctccccttgcggctgtgacc
actgctgttcaggagctgctgcgtctggctcagtcctatccagcaggacccccaaccctt
gaccctatcaacgacctgcaactcaaggatgtggcagtggtagaaggtgggctccgggcc
cggaagctggaggagctgatccgcggggctcagtgtgtgcacagcccccggtttcctgcc
cagtacgtgaagctgcgggagcgaatgcagattcagaaggaaatggagaggctgcgcttc
ctcctgtctgaccagtcgctgttactgctccctgagtaccaccagcgtgtagaggtgctc
cggactctgggctatgtggatgaggctggcacagtgaagctggcaggccgagtggcctgt
gccatgagcagccatgagctgctcctcactgaactcatgtttgacaatgcactgagcgct
ctgcgaccagaggaaatcgcagctctgctctctggcctggtgtgccagagccccggggac
cctggcgaccagctcccaagtaccctcaaacagggggtagaacgagtcaaagctgtggcc
aagcggattggcgaggttcaggtggcctgtggcctgaaccagacagtggaggagtttgtg
ggagagctgaattttgggctggtagaggttgtgtatgagtgggctaggggtatgcccttc
tccgagttggcagggctctcagggacccctgagggcttggtcgtccgctgcatccagcgt
ctggctgagatgtgtcgctcgcttcgaggagcagcacgtttggtgggtgagcctgtgctg
ggtgccaagatggagacggcagccaccttgttacggcgggacatcgtcttcgcagccagc
ctctacacccagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (83)   
   RefSeq(nuc) (3)   
   GenBank (40)   
   EMBL (40)   
Protein domain (9)   
   Pfam (9)   
All databases (121)   

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