KEGG   Mus musculus (house mouse): 11994
Entry
11994             CDS       T01002                                 
Symbol
Pcdh15, Gm9815, Ush1f, av, nmf19, roda
Name
(RefSeq) protocadherin 15
  KO
K16500  protocadherin-15
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:mmu03037]
    11994 (Pcdh15)
   04515 Cell adhesion molecules [BR:mmu04515]
    11994 (Pcdh15)
Cilium and associated proteins [BR:mmu03037]
 Primary cilia and associated proteins
  USH complex and associated proteins
   11994 (Pcdh15)
Cell adhesion molecules [BR:mmu04515]
 Cadherins
  Protocadherins
   11994 (Pcdh15)
SSDB
Motif
Pfam: Cadherin ECD Cadherin_3
Other DBs
NCBI-GeneID: 11994
NCBI-ProteinID: NP_075604
MGI: 1891428
Ensembl: ENSMUSG00000052613
UniProt: Q99PJ1
Structure
Position
10:72932003..74485663
AA seq 1943 aa
MFLQFAVWKCLPHGILIASLLVVSWGQYDDDWQYEDCKLARGGPPATIVAIDEESRNGTI
LVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIV
VQVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNG
ATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQAN
DRAQNLNERRTTTTTLTVDVLDGDDLGPMFLPCVLVPNTRDCRPLTYQAAIPELRTPEEL
NPILVTPPIQAIDQDRNIQPPSDRPGILYSILVGTPEDYPRFFHMHPRTAELTLLEPVNR
DFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPSYQGYILESAPVGATIS
ESLNLTTPLRIVALDKDIEDTKDPELHLFLNDYTSVFTVTPTGITRYLTLLQPVDREEQQ
TYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYVYTDMSPGDSVIQLTAVD
ADEGSNGEISYEILVGGKGDFVINKTTGLVSIAPGVELIVGQTYALTVQASDNAPPAERR
HSICTVYIEVLPPNNQSPPRFPQLMYSLEVSEAMRIGAILLNLQATDREGDPITYAIENG
DPQRVFNLSETTGILSLGKALDRESTDRYILIVTASDGRPDGTSTATVNIVVTDVNDNAP
VFDPYLPRNLSVVEEEANAFVGQVRATDPDAGINGQVHYSLGNFNNLFRITSNGSIYTAV
KLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVVEENLPAG
TSFLQIEAKDVDLGANVSYRIRSPEVKHLFALHPFTGELSLLRSLDYEAFPDQEASITFL
VEAFDIYGTMPPGIATVTVIVKDMNDYPPVFSKRIYKGMVAPDAVKGTPITTVYAEDADP
PGMPASRVRYRVDDVQFPYPASIFDVEEDSGRVVTRVNLNEEPTTIFKLVVVAFDDGEPV
MSSSATVRILVLHPGEIPRFTQEEYRPPPVSELAARGTVVGVISAAAINQSIVYSIVAGN
EEDKFGINNVTGVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQ
DENDHPPVFQKKFYIGGVSEDARMFASVLRVKATDRDTGNYSAMAYRLIIPPIKEGKEGF
VVETYTGLIKTAMLFHNMRRSYFKFQVIATDDYGKGLSGKADVLVSVVNQLDMQVIVSNV
PPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAYSLEDYSKCDLTVYAIDP
QTNRAIDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEG
ALLALAFIIILCCIPAILVVLVSYRQFKVRQAECTKTARIQSAMPAAKPAAPVPAAPAPP
PPPPPPPPGAHLYEELGESAMHNLFLLYHFEQSRGNNSVPEDRSSHRDGMAFSSSTTESH
EPAHVEGPLKESQPNPARTFSFVPDEDNLSTHNPLYMESIGQRSTNSDLQPRTDFEELLA
PRTQVKSQSLRGPREKIQRVWNQSVSFPRRLMWKAPNRPETIDLVEWQITNQRAECESAR
CHPSQRGSSNVLLATEDAHESEKEGGHRDTLIVQQTEQLKSLSSGSSFSSSWSHFSFSTL
PTISRAVELGSEPNVVTSPADCTLELSPPLRPRILNSLSSKRETPTCASDTEPKRNSFEI
APHPPSISAPLPHPPLPRPPIAFTTFPLPLSPPNPPPPQLVTFSLPISTPPTSSLPLPPP
LSLPPPPRPPAPRLFPQPPSTSIPSTDSISAPAAKCTASATHARETTSTTQPPASNPQWG
AEPHRHPKGILRHVKNLAELEKSVSNMYSHIEKNCPPADPSKLHTFCPAEKTGMKITHDQ
SQETLVRVVEGIDVQPHSQSTSL
NT seq 5832 nt   +upstreamnt  +downstreamnt
atgttcctacagtttgctgtctggaagtgtttaccccatgggatcctcattgcctctctc
ttggtagtcagctggggccagtatgacgatgactggcaatacgaggattgcaaactagct
aggggaggaccaccagctactatcgtggccattgatgaagagagtcgaaacggtacaatt
ctggtggataacatgttgattaaggggactgccggaggaccagaccccaccatagagctc
tctttaaaggacaacgtggactactgggtgttgctggaccccgttaaacagatgcttttc
ctgaacagtaccggaagagttctggatagagacccaccaatgaacatacactccattgtg
gtgcaagtccagtgtgtcaacaagaaggttggcacagttatctatcatgaagtacgcatc
gtggtgcgagatcggaatgacaactcccccacattcaagcatgaaagctactatgccacc
gtgaatgagctcactccagttggcaccacgatattcacggggttctcgggagacaatgga
gctacagacatagacgatggccctaatggacagatagaatacgtgattcagtacaaccca
gaagatccgacatccaacgacacctttgaaattccactcatgctgactggcaacgtggta
ctgaggaaaagactcaactatgaggataagactcgctactatgtcatcatccaagcaaat
gaccgtgcacaaaatctgaatgagaggcgaacaaccaccaccaccctcacagtagatgtt
ctagatggagatgacctgggacctatgtttctgccttgtgttcttgtgccaaacacacgt
gactgtcgtccactcacctaccaagctgccattcctgaactgaggactccggaagaactg
aaccctattttggtgacaccacctatccaagccattgatcaggaccgaaacatccaacca
ccatctgatcgacctggcatcctctactccatccttgtcggcacccctgaggattacccc
cgcttcttccatatgcatcccaggactgcagaactcactctcctggagccagtaaacaga
gacttccatcaaaaatttgatttggttattaaggctgagcaggacaatggccacccactt
cctgcctttgctagtctgcacatcgaaatactagacgaaaacaatcagagtccatacttc
acaatgcccagctatcaaggatacatcctggaatccgccccagtgggagccaccatttct
gagagcctaaacttaaccactcctctgagaattgtagctctggacaaagacatagaagac
acaaaagatccagagctccacctcttcctgaatgactacacctcggtcttcactgtgaca
cccactggtatcacccgctacctcaccctgcttcaacctgtggacagggaggaacagcaa
acctacacctttctgataacagcgtttgatggcgtgcaagaaagtgagccagtcgtggtc
aatatccgagtgatggatgcaaatgataacacgcccaccttccctgaaatctcctatgat
gtctatgtttacacagacatgagtcctggggacagcgtcattcagctgacagcggtagat
gctgatgaaggctctaatggggagatctcctatgaaatactggtggggggcaagggagac
ttcgtgatcaacaagaccacagggctggtgagcattgcaccaggcgtggagctgatcgtg
ggacagacgtatgcgctcacagtgcaggcttcggacaacgccccgcctgcagaaagaagg
cactccatctgcacagtgtacatcgaggtgcttcctcctaacaaccagagccctccccgc
ttcccgcagctgatgtacagtctggaagtcagcgaggccatgaggatcggtgctatttta
ttaaatctacaggcaactgatcgagagggagatccaatcacatatgccatcgagaatgga
gaccctcagagagtttttaatctttcagaaaccacagggattctcagcctagggaaggct
ctagaccgcgagagcacagaccgctacatcctcatcgtcacagcctcagatggcagaccg
gatggaacctcaactgccactgtgaacatagtggtgacggacgtcaatgacaacgctccc
gtgttcgatccctatctgcccaggaacctctctgtggtggaggaagaagccaatgccttt
gtgggtcaagtccgggcaacagacccagatgctgggataaacggccaagttcactacagc
ctggggaacttcaacaacctcttccgcatcacatccaacgggagcatttacacagccgtg
aagctgaacagggaagccagggaccactatgaactggttgtcgtggcaacagatggagca
gtccaccctcgacattcaactctgacactgtacatcaaggtgttggacattgatgataac
agtcctgtttttaccaattcaacgtacacagttgtcgttgaagagaatctgccagccggg
acctcctttcttcaaatagaggccaaggatgttgaccttggagccaatgtgtcatatcgg
atcagaagcccagaagtgaaacacctttttgcactgcatccattcactggagaattgtct
cttctgaggagtttggattatgaggcctttccggaccaggaggcaagcatcacattcttg
gtggaggcctttgacatttatgggactatgccacctggtatagcaacagtcacggtaatt
gtgaaggacatgaatgactaccctccagtgtttagcaaacgcatctacaaggggatggtg
gctccagatgcagtcaaggggacaccaatcaccaccgtttatgctgaagatgcggaccca
cctgggatgcctgcaagtagggtgaggtatcgagtggacgacgtgcagtttccataccca
gccagtatttttgatgtagaggaagattctggaagagtagtaacccgcgtcaatcttaat
gaagagcctactacgattttcaagctggtggttgtggcttttgatgacggcgaacctgtg
atgtccagcagtgccacggtgagaattcttgtcttacatcctggagagatcccacgcttc
acccaagaggaatacagacctcctcctgtaagtgagcttgcggccagagggactgtagtt
ggtgtcatttctgctgctgccattaatcagagcatcgtgtactccattgtggcaggaaat
gaggaagacaagtttggaatcaacaatgtcactggggtcatctatgtgaattcaccattg
gattacgagacaaggaccagctatgtgctccgggtacaagcagattctctggaagtggtc
cttgccaatctccgagtcccttcaaaaagcaatacagctaaggtgtacattgagattcag
gatgaaaacgatcaccccccagtgttccagaagaaattctacattggaggtgtgtctgaa
gacgcaaggatgttcgcatctgtgctcagagtgaaggccaccgacagggacacgggtaat
tacagtgccatggcctaccggctcatcataccgccgattaaagagggcaaagaggggttt
gtggtggaaacatacacaggtctcatcaagacagccatgctcttccacaatatgagaaga
tcctacttcaagtttcaagtgattgcaactgacgactacgggaaggggttgagcgggaaa
gcagacgtactggtctccgtggtcaatcaactggatatgcaggtcattgtctccaatgtg
ccccctacactagtggaaaagaagatagaagaccttacagagattttggatcgctacgtt
caggagcaaattcctggtgccaaggttgtggtggagtccataggtgcccgtcgccatgga
gacgcctactccctagaagactatagcaagtgcgacctgactgtctatgccatcgacccg
cagaccaacagagccatcgacagaaatgagctttttaagttcctggacggcaaactgctc
gatatcaataaagacttccagccgtattacggggaaggagggcgcattctggagattcgg
acacctgaggcagtgacgagcatcaagaagcgaggagaaagcttggggtacacagaaggg
gccttgctggccttggccttcatcatcatcctctgttgcatcccagccatcttggtcgtc
ttagtaagctaccgacagtttaaagtacgccaggctgagtgcacgaagaccgcaagaatt
cagtctgctatgcctgcagccaagcctgcagctcctgtaccagctgcgcctgcgccgccc
ccgcccccgccaccaccaccaccaggagcacatctctatgaagaactgggagagagcgca
atgcataatcttttccttctctaccattttgaacaaagcaggggaaataactcagtccca
gaagacaggagcagtcatcgcgatgggatggccttttcctccagtaccactgagtctcat
gagccagctcatgtagagggaccacttaaggagagccagcctaacccagcaaggacgttc
tcatttgttcctgatgaggataacttaagtacccataatcccctttacatggaaagtata
ggtcaaaggtcaacaaactcagaccttcagccacgaacagattttgaagagctgttggca
cccagaacacaagttaagagtcagtctctgaggggcccaagagaaaagatccagagggtg
tggaatcagtctgtgagctttcctaggcggctcatgtggaaagccccaaacaggccagag
accatagacctggtggagtggcagatcaccaatcagagagctgaatgcgaaagcgccaga
tgccacccaagccagagaggtagcagcaacgttctgctggcaactgaagatgcccacgag
tcagagaaagaagggggacacagagacaccctaatcgtccagcaaacagagcagctgaaa
tctctgtcttctggctcttctttttcctcctcttggtctcacttttctttctcaactctg
ccaacgatttccagagcggtggaactcgggtcggaacctaatgtggtcacttctcccgct
gactgcaccttggaactttctcctcctctgagaccccgtattttaaactccttaagctct
aagagagagactcccacatgtgcatcagatacagaaccaaaaaggaactcttttgagatc
gctccccatccacctagcatctctgctcccctcccacatccgcctcttcctagacctccc
attgcctttaccacttttcctcttcccctttctccccctaaccctcctcccccacaactt
gttacattttctcttcccatttctacaccccctacttcttctctacctcttcctcctcca
ctgtcacttcctcctcctcctcggccaccagctccccgcctcttcccacagcctccttcc
acgtccattccatccacagacagcatctctgcaccagctgctaaatgcactgccagtgcc
acacacgccagagaaaccacgtctacgacacagccaccagcatccaacccgcagtggggg
gcagaaccccacagacatccaaaagggatcctcagacatgtgaaaaacttggcagagctc
gagaaatcagtgtctaacatgtacagtcacatagaaaaaaactgcccacctgcagatccc
tcaaaactacacacgttttgccctgcagagaaaacaggcatgaaaatcacacatgaccag
agccaggaaacgttggttagagttgttgagggaattgacgtgcaacctcacagtcaatca
acatctttgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (24)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (22)   
DNA sequence (121)   
   RefSeq(nuc) (49)   
   GenBank (36)   
   EMBL (36)   
3D Structure (16)   
   PDB (16)   
Protein domain (3)   
   Pfam (3)   
All databases (219)   

Download RDF
DBGET integrated database retrieval system