KEGG   Mus musculus (house mouse): 12180
Entry
12180             CDS       T01002                                 
Symbol
Smyd1, 4632404M21Rik, Bop, Zmynd18
Name
(RefSeq) SET and MYND domain containing 1
  KO
K11426  [histone H3]-lysine4/36 N-trimethyltransferase SMYD [EC:2.1.1.354 2.1.1.357]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu00310  Lysine degradation
mmu01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00310 Lysine degradation
    12180 (Smyd1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mmu03036]
    12180 (Smyd1)
Enzymes [BR:mmu01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.354  [histone H3]-lysine4 N-trimethyltransferase
     12180 (Smyd1)
    2.1.1.357  [histone H3]-lysine36 N-dimethyltransferase
     12180 (Smyd1)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Histone modification proteins
   HMTs (histone methyltransferases)
    HKMTs (histone lysine methyltransferases)
     12180 (Smyd1)
SSDB
Motif
Pfam: zf-MYND SET TPR_12 DUF3369 FRG1
Other DBs
NCBI-GeneID: 12180
NCBI-ProteinID: NP_001153599
MGI: 104790
Ensembl: ENSMUSG00000055027
UniProt: P97443
Structure
Position
6:complement(71190924..71239265)
AA seq 490 aa
MTIGSMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQE
KLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTG
LTEGCLVSVDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCN
GFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG
KISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAAKEDPKPSQE
VVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEV
LSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY
AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMAEPSNE
PAPALFHKKQ
NT seq 1473 nt   +upstreamnt  +downstreamnt
atgacaataggcagcatggagaacgtggaggtcttcacttccgagggcaaaggcagaggt
ctgaaggctacgaaggagttctgggctgcggatgtcatctttgcggagagggcttattct
gcagtggtttttgacagcctcattaacttcgtgtgccacacctgcttcaagaggcaggag
aagctccatcgctgcgggcagtgcaagttcgcccattactgcgaccgcacgtgccagaag
gatgcttggctgaatcacaagaacgagtgcgctgccatcaagaaatatgggaaagtgccc
aacgagaacatcaggctggccgcccgcatcatgtggcgggtggagagagagggcactggg
ctcacagagggctgcctggtgtccgtggatgacttacagaaccacgtggagcactttggg
gaggaggagcagaaggaactccgagtagacgtggacacgttcttgcagtactggccacca
cagagccagcagttcagcatgcagtatatctcacacatctttggtgtgatcaactgcaac
ggtttcactctcagtgaccagagagggctacaggcagtaggtgtgggcatcttccccaac
ctgggcctggtgaaccatgattgctggccaaactgcactgtcatattcaacaatggcaat
catgaggcagtgaaatccatgtttcacacgcagatgaggattgagctccgggccctgggc
aagatctcagaaggcgaggagctgactgtgtcctacatagacttcctgcacctcagtgag
gagcgcaggcggcagctgaagaaacagtactactttgactgctcctgtgagcactgccag
aaggggctgaaggacgacctcttcctggcagcgaaggaagaccccaagccctcccaggaa
gtggtgaaggagatgatacaattctcaaaggatacactggaaaaaatagacaaggctcgc
tccgagggtttgtatcacgaggttgtgaagctgtgtcgggagtgcctggagaagcaggag
ccagtgttcgccgacaccaacctctacgtgcttcggctgctcagcattgcatcagaggtc
ctctcctacctccaggcctatgaggaggcctcacattatgccaggaggatggttgatggc
tacatgaaactctaccaccataacaatgcccaactgggcatggctgtgatgagggcaggg
cttaccaactggcatgctggtcacatcgaagtggggcatgggatgatctgcaaagcctat
gctattctcctggtgacccatggaccctcccaccctatcaccaaagacttagaggccatg
cggatgcagacagagatggagctgcgtatgttccgccaaaacgaattcatgtatcacaag
atgcgagaggctgccctgaacaaccagcccatgcaggtcatggctgagcctagcaatgaa
ccagcccccgctctgttccataagaagcagtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (5)   
   KEGG ENZYME (2)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (22)   
   RefSeq(nuc) (2)   
   GenBank (10)   
   EMBL (10)   
3D Structure (1)   
   PDB (1)   
Protein domain (5)   
   Pfam (5)   
All databases (63)   

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