KEGG   Mus musculus (house mouse): 12817
Entry
12817             CDS       T01002                                 
Symbol
Col13a1
Name
(RefSeq) collagen, type XIII, alpha 1
  KO
K16617  collagen type XIII alpha
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    12817 (Col13a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:mmu00536]
    12817 (Col13a1)
Glycosaminoglycan binding proteins [BR:mmu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   12817 (Col13a1)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 12817
NCBI-ProteinID: NP_031757
MGI: 1277201
Ensembl: ENSMUSG00000058806
UniProt: Q9R1N9
Position
10:complement(61674013..61814985)
AA seq 739 aa
MVAERTRKAAASGSRGPGELGAPGPGTVALAEQCARLPSPGCCGLLALALCSLALSLLAH
FRTAELQARVLRLEAERGEQQMEKAILGRVNQLLDEKWKFYSRRRREAPKMSPGCNCPPG
PPGPTGRPGLPGDKGAIGMPGRVGIKGQPGEKGAPGDAGMSIVGPRGPPGQPGTRGFPGF
PGPIGLDGRPGHPGPKGEMGLVGPRGQPGPQGQKGEKGQCGEYPHREYPGGMLAALRSNP
IMSLKLLPLLNSVRLAPPPVIKRRTFQGEQSQTGIQGPPGPPGPPGPSGPLGHPGLPGPI
GPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGVPGIAVAGMKGEPGTPGTKG
EKGAAGSPGLLGQKGEKGDAGNAIGGGRGEPGPPGLPGPPGPKGEAGVDGQAGPPGQQGD
KGQPGAAGEQGPSGPKGAKGEPGKGEMVDYNGSINEALQEIRTLALMGPPGLPGQTGPPG
PPGTPGQRGEIGLPGPPGHDGDKGPRGKPGDMGPAGPQGPPGKDGPPGMKGEVGPPGSPG
EKGETGQAGPQGLDGPTGEKGEPGDEGRPGATGLPGPIGLPGFTGEKGEAGEKGDPGAEV
PGPPGPEGPPGPPGLQGFPGPKGEAGLEGSKGEKGSQGEKGDRGPLGLPGTPGPIGVPGP
AGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGL
DAPCPLGEDGLPVQGCWNK
NT seq 2220 nt   +upstreamnt  +downstreamnt
atggtggcggagcgcacccgcaaagcggcagcctctggcagccgcggccctggggagctg
ggcgctccggggcccgggacagtggcgctggctgagcagtgcgctaggctgccgagcccc
gggtgctgcggactgctggctctagcgctgtgttcgctggcgctcagcctgctcgcccac
tttcggaccgcggagctgcaggcccgggtgctgcgcttggaagcagagcgcggggagcag
cagatggagaaagctattttgggacgagtcaaccaactgctggacgagaaatggaagttc
tactcgcgtaggcgccgggaagccccgaagatgtctccaggatgtaactgcccaccagga
cctcctggtcccactggaagacctggactcccaggggacaagggtgccatcgggatgcct
ggacgtgtgggtatcaaaggtcaaccaggcgagaagggtgcccctggagatgcggggatg
tccatcgtcgggcctcgaggcccccctggccagcctggtacccgaggtttccctggattc
ccgggtcccattggtcttgacggcaggccgggccaccccggacctaaaggggagatgggc
ctggtgggtcctcgaggacaaccgggacctcagggacaaaagggagaaaagggtcagtgt
ggagagtacccacacagggagtacccaggcggcatgctagcagctctgcgctccaacccg
ataatgtccctaaagctgttgcctctactcaattcagtgcggctggctccacccccagtc
attaaaaggcggacctttcagggggaacaaagtcagactggcatccaaggccctccaggg
ccaccgggccccccaggaccaagtggccctctgggacacccaggactgccagggcctata
gggccacctggtttaccggggcctcctggaccaaagggagacccagggatccagggctat
catggccgcaagggagagcggggcatgccaggaatgccaggcaagcacggagccaagggg
gttcctgggattgccgtggctgggatgaagggtgagccagggacgccaggaaccaagggt
gagaagggtgcagcaggctcccctggcctcctggggcagaagggagaaaaaggtgatgct
ggcaatgccatcggaggaggcaggggggagcctggccccccggggctccctgggccccct
gggccaaagggagaagctggtgttgatggccaggctgggcccccaggacagcaaggagac
aaggggcagccaggagcagctggtgaacagggaccctctggccccaagggtgccaagggt
gaacccggcaaaggagagatggtggattataatggcagcatcaacgaggcgcttcaggag
atcaggacgctggccttgatggggcctcctggtcttcctggacaaacaggcccacccgga
cctccagggactccaggccaaaggggggagattggactgccaggccctccaggacacgat
ggggacaaggggcctcgaggaaaaccaggagatatggggccggctggtcctcaaggaccc
ccaggaaaggatgggcctccaggaatgaagggagaagtcggacccccaggaagtccaggg
gagaaaggggagacaggacaagcaggcccccagggtctagacggcccaactggggagaaa
ggagaaccaggtgacgaagggaggcctggagcgacaggattgcctgggcccatcgggctc
ccgggattcacaggagagaaaggagaagctggggagaaaggcgacccgggagcagaggtt
cctgggccgccagggccagagggtcctccaggacctccgggcctccaaggttttcctgga
ccaaagggagaagcaggcctagagggcagtaaaggagagaagggctcccagggagaaaaa
ggagaccgggggcctctgggattgcctggtactccaggaccaatcggggttccaggccca
gccggaccaaagggcgaaaggggcagcaaaggcgacccagggatgacgggaccaacggga
gcagctgggctgcctggtttacatggaccacccggggacaaaggaaaccggggggagagg
gggaagaagggctctagagggcctaaaggggacaagggggaccaaggagcacctggacta
gacgccccctgcccgctgggagaagatggcttaccagtccaaggctgctggaacaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (30)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (28)   
DNA sequence (36)   
   RefSeq(nuc) (28)   
   GenBank (4)   
   EMBL (4)   
Protein domain (1)   
   Pfam (1)   
All databases (100)   

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