KEGG   Mus musculus (house mouse): 12819
Entry
12819             CDS       T01002                                 
Symbol
Col15a1
Name
(RefSeq) collagen, type XV, alpha 1
  KO
K08135  collagen type XV alpha
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    12819 (Col15a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:mmu00535]
    12819 (Col15a1)
Proteoglycans [BR:mmu00535]
 Extracellular matrix (ECM) proteoglycans
  Basement membrane proteoglycans
   12819 (Col15a1)
SSDB
Motif
Pfam: Endostatin Collagen Collagen_trimer Laminin_G_3
Other DBs
NCBI-GeneID: 12819
NCBI-ProteinID: NP_034058
MGI: 88449
Ensembl: ENSMUSG00000028339
UniProt: O35206
Structure
Position
4:47207744..47313165
AA seq 1367 aa
MTHRRTAQGRRPRWLLSIISALLSAVLQTRAATGSASQVHLDLTVLIGVPLPSSVSFTTG
YGGFPAYSFGPGANVGRPARTLIPPTFFRDFAIGVAVKPNSAQGGVLFAITDAFQKVIYL
GLRLSSVEDGRQRVILYYTEPGSHVSREAAVFSVPVMTNRWNRFAVTVQGEEVALFMDCE
EQSQVRFQRSSWPLTFEPSAGIFVGNAGAMGLERFTGSIQQLTIYSDPRTPEELCEAQES
SASGEASGFQEMDEVAEIMEAVTYTQAPPKESHVDPISVPPTSSSPAEDSELSGEPVPEG
TPETNLSIIGHSSPEQGSGEILNDTLEVHAMDGDPGTDDGSGDGALLNVTDGQGLSATAT
GEASVPVTTVLEAENGSMPTGSPTLAMFTQSIREVDTPDPENLTTTASGDGEVPTSTDGD
TEADSSPTGGPTLKPREEATLGSHGEEWLTPAVSKMPLKAFEEEEASGTAIDSLDVIFTP
TVVLEQVSRRPTDIQATFTPTVVLEETSGAPTDTQDALTPTVAPEQMFTAEPTDGGDLVA
STEEAEEEGSGSMPPSGPPLPTPTVTPKRQVTLVGVEAEGSGPVGGLDEGSGSGDIVGNE
DLLRGPPGPPGPPGSPGIPGKPGTDVFMGPPGSPGEDGAPGEPGPQGPEGQPGLDGASGQ
QGMKGEKGARGPNGSAGEKGDPGNRGLPGPPGKNGEVGTPGVMGPPGPPGPPGPPGPGCT
TELGFEIEGSGDVRLLSKPTISGPTSPSGPKGEKGEQGAKGERGADGTSTMGPPGPRGPP
GHVEVLSSSLINITNGSMNFSDIPELMGPPGPDGVPGLPGFPGPRGPKGDTGVPGFPGLK
GEQGEKGEPGAILTGDVPLEMMKGRKGEPGIHGAPGPMGPKGPPGHKGEFGLPGRPGRPG
LNGLKGAKGDRGVTLPGPPGLPGPPGPPGPPGAVVNIKGAVFPIPARPHCKTPVGTAHPG
DPELVTFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLNSLKGENEDASF
RGESSNNLFVSGPPGLPGYPGLVGQKGEAVVGPQGPPGIPGLPGPPGFGRPGVPGPPGPP
GPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTALSDMGDMLQKAHLVIEGTFIYLRD
SGEFFIRVRDGWKKLQLGELIPIPADSPPPPALSSNPYQPQPPLNPILSANYERPVLHLV
ALNTPVAGDIRADFQCFQQARAAGLLSTFRAFLSSHLQDLSTVVRKAERFGLPIVNLKGQ
VLFNNWDSIFSGDGGQFNTHIPIYSFDGRDVMTDPSWPQKVVWHGSNPHGVRLVDKYCEA
WRTTDMAVTGFASPLSTGKILDQKAYSCANRLIVLCIENSFMTDTRK
NT seq 4104 nt   +upstreamnt  +downstreamnt
atgacacacaggaggaccgcgcagggccggcgcccgaggtggctgctctccatcatctcc
gcgctgctctccgctgtcctgcagacccgcgctgcgacagggtcagcctctcaggttcac
ctggacctcacagtgctcattggtgtcccattaccctcgtctgtgtcctttaccaccggc
tatggcggtttcccggcttacagctttgggcctggtgccaacgttggccgcccagccagg
accctcatcccaccgaccttcttcagggatttcgccattggtgtggcggtgaagcccaat
agcgcccaagggggcgtgctcttcgctattaccgatgctttccagaaagtcatctacctg
ggcctgcggctttcaagtgtggaggatgggcgccagcgggttatcctctactacacggaa
ccaggctcccacgtgtcccgtgaagctgcggttttctccgtgcccgtgatgaccaacagg
tggaatcgttttgctgtgaccgtccagggcgaagaagttgctcttttcatggactgtgag
gaacagagccaagtccgtttccagcgatcgtcctggcctttgacctttgagcccagtgcc
gggatctttgtgggcaatgctggagctatggggctggagagatttacgggttccatacaa
cagcttaccatctattcagaccccaggacccctgaggagctgtgtgaagcacaagagtcc
tcggcgtctggagaagccagtgggtttcaggagatggatgaagtcgctgaaatcatggaa
gctgtcacctacacacaagccccgcctaaagaatcacacgttgatcccataagcgtgccc
cctacttcatcctctcctgccgaggactcggagctttctggtgagccggtaccagaagga
accccagaaacgaacttgagcatcattggacacagcagccctgagcaagggtctggtgag
atcctgaatgatacgctggaggtccatgcgatggatggggaccctggtactgatgatggt
tcaggggatggagccttgttgaacgtcactgatggtcaggggttatcagcaacagcaact
ggggaggccagtgtgcctgtcaccactgtcctggaagcagagaatggcagtatgcccact
gggagccccaccctggccatgtttacccagagcatcagggaagtggacactccggatcca
gaaaatctaacaacaacagcatcaggggatggtgaggtgcccaccagcactgatggggac
acagaggctgacagctcgcccactggagggccaaccctgaagccaagagaagaggccact
ctgggttcacacggtgaggaatggttaaccccagctgtgtccaaaatgcccctcaaggct
tttgaggaggaggaagccagtgggactgccatcgacagcctggatgtcatcttcacaccc
acggtggtccttgagcaagtcagcaggagacctacagacatccaagccactttcacgccc
acagtggtccttgaagaaaccagcggggcccctacagacacccaggacgctctcacaccc
acagtggcccctgagcaaatgttcactgctgaacccacagatggaggagacttggtggcg
tctacagaggaagctgaagaggagggatctggtagcatgccccccagtgggcccccactc
cccacacccacagtgactcccaagaggcaggtcaccctggtaggagtggaagccgagggg
tcaggccctgttgggggcttggatgagggctcaggctctggagacatcgtgggcaatgag
gatctgctgagaggtccgccgggtcctccaggcccaccgggatcacctgggatcccaggg
aaaccaggaactgatgttttcatgggacccccggggtctcctggggaggatggagctcct
ggtgagccaggaccccagggccccgagggacagcctggacttgatggagcctctggccag
caaggaatgaaaggagagaagggagcaagagggcctaatggttcggctggcgagaagggt
gaccctggaaaccgaggcttaccaggtcccccagggaagaatggagaagttggcacccct
ggggtcatgggaccaccagggcctcctggaccccctgggcctccaggcccgggatgtacc
acagaacttggatttgagattgaaggctctggggacgtccggctgctgagtaaacccaca
atctcaggacccacctctccaagtggtcccaaaggagaaaaaggagagcaaggagccaag
ggtgaacgaggagcggacggaaccagcactatggggccgcctgggcccaggggcccgcct
gggcatgtcgaggtcctgtccagttctttgatcaacatcaccaatggatccatgaatttc
tcagacattcctgagctcatgggacctccggggccagatggtgtacccgggctgccagga
tttccaggccccagaggaccaaaaggtgacaccggtgtgcctggattcccagggctaaaa
ggagaacagggtgagaagggagagcctggagccatcttgactggggacgtccctctggaa
atgatgaaggggagaaagggtgaacctggaatccatggtgcaccgggacccatgggaccc
aaaggaccaccaggacacaaaggagagtttggcctcccaggacgacctggtcgcccagga
ctgaatggcctcaagggtgccaaaggagatcgaggggtcacgctgcctggtccacctggc
ctacctggacccccagggcccccagggccccctggagctgtggttaacatcaaaggcgct
gtttttccaatacctgcccggccacactgcaaaacaccagttggtaccgctcaccctggc
gacccagagcttgtcactttccacggtgttaaaggagaaaaggggtcctggggtcttcct
ggctcaaaaggagaaaagggggaccaaggagctcaaggaccaccaggccctccagtcgat
ccagcttacctgagacattttctcaacagcttgaagggggagaatgaagatgcttcattc
agaggagagtccagcaacaacctctttgtatcagggcctccaggcctaccaggataccca
ggcctggttggacagaaaggagaggctgttgtggggcctcagggacccccaggaattcca
ggcctgcctgggccacctggctttgggagacctggtgttcctggaccaccaggaccccct
gggccaccaggacctcctgccattctgggtgcagctgtggctcttcctggcccacctggc
cctccaggacagccaggactccccggatccagaaacttggtcacagcgctcagcgacatg
ggtgacatgctacagaaagctcacttggtcatagaagggacattcatctacttgagagac
agtggggagtttttcattcgtgtccgagatggttggaaaaagttacagttgggagaactg
atccccattcctgctgatagccccccaccaccagcactttccagcaatccgtatcagcca
caacctccactgaaccccattttaagtgccaactatgagaggcctgttctgcacctggtt
gctctgaacacaccggtggctggggacatccgagctgatttccagtgcttccagcaggcc
agggctgcaggcctcctgtccactttccgagcctttctgtcttcacacctgcaggatctc
tccacagtcgtgcggaaggcagagaggttcggccttccaattgtgaatctcaagggccaa
gtgctttttaacaattgggactcgatattttctggtgatggaggtcaattcaatacacac
attccaatctactcctttgacggtcgggatgtgatgactgatccttcctggccccagaag
gtggtctggcacggctccaacccccatggtgtccgtcttgtggacaagtactgtgaagcc
tggcgaaccacggacatggcagtaaccggatttgcctccccactgagcacagggaagatt
ctggaccagaaagcttacagctgtgctaacaggctaatcgtgctgtgcatcgaaaacagt
ttcatgacagacactaggaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (17)   
   RefSeq(nuc) (1)   
   GenBank (8)   
   EMBL (8)   
3D Structure (1)   
   PDB (1)   
Protein domain (4)   
   Pfam (4)   
All databases (65)   

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