KEGG   Mus musculus (house mouse): 12831
Entry
12831             CDS       T01002                                 
Symbol
Col5a1
Name
(RefSeq) collagen, type V, alpha 1
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04820  Cytoskeleton in muscle cells
mmu04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    12831 (Col5a1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    12831 (Col5a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:mmu00536]
    12831 (Col5a1)
Glycosaminoglycan binding proteins [BR:mmu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   12831 (Col5a1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_1
Other DBs
NCBI-GeneID: 12831
NCBI-ProteinID: NP_056549
MGI: 88457
Ensembl: ENSMUSG00000026837
UniProt: O88207 B1AWB9
Position
2:27776393..27929522
AA seq 1838 aa
MDVHTRWKAARPGALLLSSPLLLFLLLLWAPPSSRAAQPADLLEMLDFHNLPSGVTKTTG
FCATRRSSSEPDVAYRVSKDAQLSMPTKQLYPESGFPEDFSILTTVKAKKGSQAFLVSIY
NEQGIQQLGLELGRSPVFLYEDHTGKPGPEEYPLFPGINLSDGKWHRIALSVYKKNVTLI
LDCKKKITKFLSRSDHPIIDTNGIVMFGSRILDDEIFEGDIQQLLFVSDNRAAYDYCEHY
SPDCDTAVPDTPQSQDPNPDEYYPEGEGETYYYEYPYYEDPEDPGKEPAPTQKPVEAARE
TTEVPEEQTQPLPEAPTVPETSDTADKEDSLGIGDYDYVPPDDYYTPPPYEDFGYGEGVE
NPDQPTNPDSGAEVPTSTTVTSNTSNPAPGEGKDDLGGEFTEETIKNLEENYYDPYFDPD
SDSSVSPSEIGPGMPANQDTIFEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLP
GPPGTTGPTGQMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVS
AQESQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEPGDMGPQGPRGVQGPP
GPTGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGIPGDD
GERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPP
GQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPP
GPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGED
GPEGPKGRGGPNGDPGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGR
GTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFP
GPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPP
GPPGEQGLPGAAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGSEGPP
GPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGLPGEKGPQGPAGRDGLQGPV
GLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEP
GPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPS
GAPGADGPQGPPGGIGNPGAVGEKGEPGEAGDPGLPGEGGPLGPKGERGEKGEAGPSGAA
GPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPT
GEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLR
GIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEK
GDRGLPGPQGSSGPKGDQGITGPSGPLGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHP
GLPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGAGESYVDYADGMEEIFGSLNSLKL
EIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTC
VFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASAHQ
NVTYNCYQSVAWQDAATGSYDKAIRFLGSNDEEMSYDNNPYIRALVDGCATKKGYQKTVL
EIDTPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFLG
NT seq 5517 nt   +upstreamnt  +downstreamnt
atggacgtacacacccgctggaaagctgcgcgcccaggcgccctgctgctgtcttcgccg
ctactcctgttcctgctgctgctgtgggcgccgccttcgagccgcgcagctcagccagca
gatcttctggagatgctagattttcacaatttgccctcaggggtaacgaaaaccacaggt
ttctgtgctactcgaagatcttccagcgagccggatgttgcctaccgagtctctaaagat
gcacagctcagcatgcccaccaagcagctgtaccctgagtctggttttcccgaggacttc
tccatcctgacaaccgtgaaagccaagaaaggcagccaggccttcctagtctccatttac
aatgagcagggcatccagcagttggggctggagctgggccgctcccctgtcttcctctat
gaggaccacacagggaagcccgggcctgaagagtatccgcttttccctggcatcaacttg
tccgatggcaagtggcaccgaattgctctcagtgtctacaagaaaaatgtcaccttgatc
ctcgactgtaagaagaagattacgaagttcctcagccgcagtgaccaccccataatagac
accaatgggattgtcatgtttggctcccggattctggatgatgaaatatttgagggtgac
atccaacagttgcttttcgtctctgacaaccgagctgcctatgactactgtgagcactac
agccccgactgtgacactgcggtccctgacacacctcagtcacaggaccctaacccggat
gaatattacccagaaggagagggtgagacctattactatgagtatccatattatgaagac
cctgaagacccgggaaaggagcctgcccctactcagaagccagtggaagctgccagagaa
accacagaggttcctgaggagcagacccagcccctacccgaagcccctacagtgcctgag
accagtgacacggctgacaaggaggacagtctagggatcggggactatgactacgtgccc
ccagatgactattacactccacccccatatgaagactttggatatggcgagggtgtggag
aaccctgaccagcccaccaaccccgactcaggggctgaggtccccaccagcaccactgtt
acctccaacacctccaatccagctccaggagaagggaaggatgacctgggcggcgaattc
accgaggaaaccatcaagaatctagaggaaaactactatgacccgtactttgaccccgac
tccgactccagtgtctctccatcagagatagggccaggcatgcccgctaaccaggacacc
atctttgaggggattggaggaccccgaggtgagaaagggcaaaagggagaaccagccatc
attgagccggggatgctgatcgaggggccccctggccctgaaggccctgctggtcttcca
ggacctccaggaactacaggtcctactggccaaatgggtgaccctggagaaaggggtccc
cctgggcgcccaggtcttcctggagctgatggcttgcctggccccccaggtaccatgctc
atgctgccgttccggtttggaggcggtggcgatgccggttctaagggccccatggtctct
gcgcaggagtcccaggcccaggctatcctccagcaagccaggttggcactgaggggacca
gctggcccaatgggtctcaccgggagacctggccccatgggtcctcctgggagtggcggt
ttgaaaggtgagccaggagacatgggacctcagggtcctcgaggtgtgcaaggcccacct
ggcccaacagggaagcctggaagacggggccgtgctggaagtgatggagccagaggcatg
cctggacaaacaggccccaagggtgaccgtggctttgatggtctggctgggttgccggga
gagaaaggccatagaggtgaccctggtccttctggcccgcccggaatcccaggagatgat
ggagaaaggggtgacgatggagaagttgggcccaggggactgcccggggagcctggacca
cgtggtctgcttgggccaaaaggccccccagggcctcctggacctcctggtgtaacgggt
atggatggccagcctggcccaaaaggaaatgtgggtccccagggagagcctgggccgcca
ggacagcagggtaatcctggtgcccagggtcttccaggtccccagggtgccattggtcct
ccaggagaaaagggtcctttggggaaaccaggtctcccaggaatgccaggcgctgatgga
cccccggggcaccctggaaaagaaggtcctccaggagagaaaggaggccagggtcctcct
ggcccccagggtcccattggctaccccggtccacgaggagtcaagggggcagatggcatc
cgaggtctgaagggcaccaagggggagaagggtgaagacggcttccctgggtttaaaggc
gacatgggaataaagggtgaccggggggaaatcggcccacctggtccccgaggagaagat
ggtcctgaaggtccaaagggtcgaggtggtcccaatggtgatcctggtcccctggggccc
actggggaaaagggaaagcttggcgtgcccggattaccggggtacccaggaagacaaggg
ccaaagggttccattggattccctggcttcccgggcgccaacggagagaagggtggcagg
gggacacctggaaagccaggaccacggggacagagaggcccaacgggcccgcggggtgaa
cgaggcccacgaggcatcacggggaagcctggccctaagggcaactccggaggtgatggc
ccagctggccctcctggtgaacggggacccaacggaccccaaggtcccaccggctttcct
ggacccaagggtcccccgggcccaccaggcaaggacggactccctggacaccctgggcag
agaggggagaccggtttccaaggcaagactggccctccagggcccccaggagtggttggc
cctcagggtcccacaggagagacgggccccatgggtgagcgtggccatcctggtcctcca
ggccctcctggtgaacagggcctcccaggtgctgctgggaaagaaggaacgaagggtgac
ccaggtcctgctggcctccctgggaaggatggccctccaggattgcgtggattccctggg
gaccgagggctacctggccccgtgggagcccttggactcaaaggcagtgaaggcccccct
ggcccaccaggtcctgcgggttctccaggggagagaggaccagctggtgccgctgggccc
atcggaattccagggagacctgggcctcagggacctccggggcctgctggagagaaagga
cttcctggcgagaaaggtccacaaggcccagctggccgagatggcctccaaggtcccgtg
gggctccctggaccagccggcccagtgggtcctcctggagaagatggagataagggagag
atcggagagccagggcagaagggaagcaagggcgacaaaggcgagcagggtcctcctggg
cctaccggtcctcaaggcccgattggacagccaggcccttcgggagcagatggtgaacct
ggccctcgtggacagcagggcctgtttgggcagaaaggagatgaaggttcaagaggtttc
ccaggaccccccgggccagtgggattgcagggtttgccaggacctccaggagaaaagggc
gagacaggagacgtgggccagatgggccctcctggtccaccaggcccccgaggaccctct
ggagctccaggtgccgatggaccacagggtcctcctggagggattggcaaccctggtgca
gtcggagaaaagggagaacctggtgaagctggagatcctggccttccaggagaaggaggt
cccctgggacctaaaggagaaagaggggagaagggagaggctggcccctctggtgctgct
ggaccccctggacccaaaggccctcctggagatgatggccccaaaggcagccctggccct
gtgggctttcctggagatcctggtccccctggagagccaggccccgcaggtcaagacggc
ccacctggtgacaaaggggacgatggtgaacctgggcagacggggtccccgggccctact
ggtgaacctggtccatctgggcctccaggaaagaggggtcccccaggccctgcaggccct
gaaggcaggcagggggagaaaggagccaagggagaagctggcttagaaggccctcctggg
aagactggccccattggcccccaaggggcccctgggaagcctggccccgatggtctccgt
ggaatccctggtcctgtgggtgagcaaggcctcccaggatccccaggccccgatggtcca
cccggccccatgggtcctccaggactccctggcctcaaaggagactccggtcccaaaggt
gaaaagggccatccaggcctgattggactcatcggccctccgggagagcaaggtgaaaag
ggtgaccgtggactcccaggcccccagggttcatctggtcctaaaggagatcagggcatc
acaggtccttctggcccacttgggcctcctggtcctcctggcttgccgggccctccaggt
cccaaaggtgctaagggctcttcgggtcccaccggcccgaagggtgaggcaggccaccca
ggactccccggcccacctggccctccgggtgaggtcatccagcccctgccaatccaggcc
tccaggactcggcggaacattgatgccagccagctcctggacgatggggctggggagagc
tacgtggattatgcagatggcatggaagagatctttggttccctcaactccctgaagctg
gagattgaacagatgaagcgaccactgggcacccagcagaacccagcccgtacctgcaag
gatctacagctctgtcatcctgacttcccagatggcgaatactgggtcgatcccaaccaa
gggtgctccagggactccttcaaagtctactgcaatttcacagctggagggtccacgtgc
gtcttccctgacaagaagtctgagggagccagaatcacttcttggcccaaagaaaaccca
ggttcctggttcagtgaattcaagcgtgggaaactgctctcctatgtggatgctgaaggc
aaccccgtgggcgtggtacaaatgaccttcctgcggctgctgagcgcctctgcccaccag
aacgtcacctacaactgctaccagtccgtggcctggcaggatgccgccacaggcagctat
gataaggctatccgcttcttgggctccaacgatgaggaaatgtcttatgataacaacccc
tacatccgtgccctggtggatggctgtgctaccaagaaaggctaccagaagacggtgctg
gagatcgacacgcccaaagtagagcaagtccccattgtggacatcatgttcaacgacttt
ggcgaagcctcacagaaatttggatttgaagtggggccagcttgcttcctaggctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (22)   
   RefSeq(nuc) (2)   
   GenBank (10)   
   EMBL (10)   
Protein domain (4)   
   Pfam (4)   
All databases (75)   

Download RDF
DBGET integrated database retrieval system