KEGG   Mus musculus (house mouse): 12841
Entry
12841             CDS       T01002                                 
Symbol
Col9a3
Name
(RefSeq) collagen, type IX, alpha 3
  KO
K08131  collagen type IX alpha
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04151  PI3K-Akt signaling pathway
mmu04510  Focal adhesion
mmu04512  ECM-receptor interaction
mmu04820  Cytoskeleton in muscle cells
mmu04974  Protein digestion and absorption
mmu05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    12841 (Col9a3)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    12841 (Col9a3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    12841 (Col9a3)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    12841 (Col9a3)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    12841 (Col9a3)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    12841 (Col9a3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:mmu00535]
    12841 (Col9a3)
Proteoglycans [BR:mmu00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   12841 (Col9a3)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 12841
NCBI-ProteinID: NP_001365706
MGI: 894686
Ensembl: ENSMUSG00000027570
Position
2:180239895..180263985
AA seq 719 aa
MTGAPALALLLLGQLLTATSAQKVGPRGPPGPQGPPGKPGKDGIDGEAGPPGLPGLPGPK
GTSGKPGKPGEAGLPGLPGVDGLTGRDGPAGPKGAPGERGSLGPPGPPGLGGKGLPGPPG
EAGVSGLPGGIGLRGPPGPSGLPGLPGLPGPPGPPGNPGVLPEGATDLQCPAICPPGPPG
PPGMPGFKGPTGYKGEQGEVGKDGEKGSPGPPGPPGIPGTVGLQGPRGLRGLPGPLGPPG
DRGPIGFRGPPGTPGAPGKVGDRGERGPEGFRGPKGDLGRPGPKGIPGMAGPGGEPGMPG
KDGKDGVPGLDGEKGEAGRNGGQGEKGPNGLPGLPGRAGSKGEKGEPGRTGELGEAGPSG
EPGIPGDVGVPGERGEAGHRGSVGALGPQGPPGAPGIRGFQGQKGSTGDPGLPGPQGLRG
DVGDRVRVVLLHLPALTSLHRLKPAAAHSFPRGWQGWQHQLCGQGPGGATGPKGDQGIAG
SDGLPGDKGELGPNGPVGQKGESGSRGELGPKGIQGPNGTSGVQGVPGPPGPLGLQGVQG
VPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPP
GPPGSIGHPGARGPPGYRGPTGELGDPGPRGSQGDRGDKGATGAGLDGPAGDQGYQGPQG
VPGISKDGRDGAHGEPGLPGDPGLPGAAGAQGTPGICDTSACQGAVLGGGGEKSGPRSS
NT seq 2160 nt   +upstreamnt  +downstreamnt
atgaccggagcgcctgccctagccctgctgctgctggggcagctcctgacggccacctcc
gcgcagaaagtgggaccccgaggcccccctggtccccaagggcctcctggaaaacccggc
aaggatggcattgatggagaagctggccctccaggtctgcctggccttccaggacccaaa
gggacctcagggaagccagggaagccgggagaggcaggactgccaggactgcctggtgta
gatggtctgacagggagagatggacccgcaggacccaaaggtgcccctggagaacgggga
agtctaggacccccagggccaccaggacttgggggcaaaggcctccctggacctcctgga
gaggcaggagtgagtggcctcccaggtgggattggtctacgtggccccccgggaccctct
ggacttccaggactgcctggcctcccaggacctcctggacctcctggaaaccctggagtc
ctccctgaaggtgctactgatctgcagtgtcccgccatctgcccgccaggccctccggga
cccccaggaatgccggggttcaaggggcctactggctacaaaggggaacaaggagaagtt
ggcaaagatggtgagaagggtagtcctggcccccccgggcctcctggaatcccaggcacc
gtggggctacagggcccacgaggattaagaggacttccagggccactcgggccccctggg
gaccggggtcccattgggtttcggggcccccctgggaccccaggagcacctgggaaagtg
ggtgacaggggtgaaaggggaccagaagggttccgtggccctaagggtgacctgggcagg
cctggtcccaaaggaatccctggaatggctgggccaggcggagaaccaggcatgccaggc
aaggatggcaaagatggtgtgccgggacttgatggtgagaagggagaggctggtcgcaat
ggtggccaaggagagaaaggccccaatgggctgccggggctccctggacgagcagggtcc
aaaggcgagaagggagaaccgggtagaactggcgagctgggtgaggctggcccctctgga
gagccaggtatccctggagatgttggtgttccaggggagcgtggtgaggctggtcacagg
ggctccgtgggagctcttggcccacaaggtcctcctggtgctcctggcatccgtggcttt
cagggacaaaaaggcagcacaggagaccctggccttccgggcccccaaggcctacgggga
gatgtgggtgaccgggtaagggttgttctcttgcacctccctgctctaaccagtctacat
agactcaagccagcagcagcccactccttcccacgtgggtggcagggatggcagcaccaa
ctatgtggacagggtccaggaggtgccacaggccctaagggagaccagggcattgcaggt
tccgatggtcttccaggggacaaaggcgagctgggtcctaatggccccgttggacaaaaa
ggagagtctggcagccgaggggaactgggccccaaaggcatccagggccccaatggcacc
agtggagtccagggtgtacctggtcccccaggtccactgggcctccaaggtgtgcagggt
gtcccaggcatcaccgggaagcctggagttccgggcaaggaagccagtgaacagcgcatc
agggagctatgcgggggtatgatcagtgagcaaattgcacagttggctgcacacctgagg
aagcccttagcaccaggctccatcggcaggcctggtccagctggccccccaggccctcca
ggccctccaggctctattggccaccctggcgctcggggtccccctggataccgtggtccc
actggggaactaggagatcctggaccaagagggagccagggtgacagaggggacaaggga
gcaacaggtgcagggctggatgggcctgctggggaccagggctaccaagggcctcaaggt
gtacctggcatcagcaaagatggtcgagatggtgctcatggtgagcctggccttcccggt
gatcctggccttcctggagctgctggtgctcagggtaccccagggatctgcgacacttca
gcctgccaaggagctgtgttagggggaggtggggaaaagtcgggtcctcggagctcataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (21)   
   RefSeq(nuc) (3)   
   GenBank (9)   
   EMBL (9)   
Protein domain (1)   
   Pfam (1)   
All databases (63)   

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